Gene : Glyma.09G236000 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR24012:SF386 - PHRAGMOPLASTIN INTERACTING PROTEIN 1 Genomic Order:  2360
Name:  ? Glyma.09G236000 Secondary Identifier:  ? PAC:30484872
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G236000 0.5kb upstream 0.5kb upstream 6757 true Chr09: 45856080-45862836 Glycine max
Glyma.09G236000 0.5kb upstream 0.5kb upstream 500 false Chr09: 45856080-45856579 Glycine max
Glyma.09G236000 0.5kb downstream 0.5kb downstream 6757 true Chr09: 45856580-45863336 Glycine max
Glyma.09G236000 0.5kb downstream 0.5kb downstream 500 false Chr09: 45862837-45863336 Glycine max
Glyma.09G236000 1.0kb upstream 1.0kb upstream 7257 true Chr09: 45855580-45862836 Glycine max
Glyma.09G236000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 45855580-45856579 Glycine max
Glyma.09G236000 1.0kb downstream 1.0kb downstream 7257 true Chr09: 45856580-45863836 Glycine max
Glyma.09G236000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 45862837-45863836 Glycine max
Glyma.09G236000 2.0kb upstream 2.0kb upstream 8257 true Chr09: 45854580-45862836 Glycine max
Glyma.09G236000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 45854580-45856579 Glycine max
Glyma.09G236000 2.0kb downstream 2.0kb downstream 8257 true Chr09: 45856580-45864836 Glycine max
Glyma.09G236000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 45862837-45864836 Glycine max
Glyma.09G236000 5.0kb upstream 5.0kb upstream 11257 true Chr09: 45851580-45862836 Glycine max
Glyma.09G236000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 45851580-45856579 Glycine max
Glyma.09G236000 5.0kb downstream 5.0kb downstream 11257 true Chr09: 45856580-45867836 Glycine max
Glyma.09G236000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 45862837-45867836 Glycine max
Glyma.09G236000 10.0kb upstream 10.0kb upstream 16257 true Chr09: 45846580-45862836 Glycine max
Glyma.09G236000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 45846580-45856579 Glycine max
Glyma.09G236000 10.0kb downstream 10.0kb downstream 16257 true Chr09: 45856580-45872836 Glycine max
Glyma.09G236000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 45862837-45872836 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312485 5265 Fabidae View MSA
124060480 5270 Rosid View MSA
123737702 5271 Pentapetalae View MSA
122796328 5272 Eudicot View MSA
122049388 5273 Angiosperm View MSA
121345095 5274 Embryophyte View MSA
123424707 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.2135 0.0 42.5779   High
cufflinks 10.8748 0.0 33.1227    
cufflinks 13.0042 0.0 39.0637    
cufflinks 11.6235 0.0 35.3151    
cufflinks 7.86207 0.0 24.9398    
cufflinks 7.36389 0.0 23.6425    
cufflinks 7.89182 0.0 25.046    
cufflinks 12.0057 0.0 36.2806    
cufflinks 6.28704 0.0 20.8413   Low
cufflinks 2.092        
cufflinks 2.052        
cufflinks 3.086        
cufflinks 1.712       Low
cufflinks 1.978        
cufflinks 3.119        
cufflinks 2.865        
cufflinks 1.391       Low
cufflinks 3.055        
cufflinks 2.977        
cufflinks 4.42       High
cufflinks 2.763        
cufflinks 4.221       High
cufflinks 3.101        
cufflinks 2.135        
cufflinks 3.564        
cufflinks 2.103        

0 Strain