Gene : Glyma.09G276900 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR10126 - TATA-BOX BINDING PROTEIN Genomic Order:  2769
Name:  ? Glyma.09G276900 Secondary Identifier:  ? PAC:30485890
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G276900 0.5kb upstream 0.5kb upstream 6133 true Chr09: 49235261-49241393 Glycine max
Glyma.09G276900 0.5kb upstream 0.5kb upstream 500 false Chr09: 49240894-49241393 Glycine max
Glyma.09G276900 0.5kb downstream 0.5kb downstream 6133 true Chr09: 49234761-49240893 Glycine max
Glyma.09G276900 0.5kb downstream 0.5kb downstream 500 false Chr09: 49234761-49235260 Glycine max
Glyma.09G276900 1.0kb upstream 1.0kb upstream 6633 true Chr09: 49235261-49241893 Glycine max
Glyma.09G276900 1.0kb upstream 1.0kb upstream 1000 false Chr09: 49240894-49241893 Glycine max
Glyma.09G276900 1.0kb downstream 1.0kb downstream 6633 true Chr09: 49234261-49240893 Glycine max
Glyma.09G276900 1.0kb downstream 1.0kb downstream 1000 false Chr09: 49234261-49235260 Glycine max
Glyma.09G276900 2.0kb upstream 2.0kb upstream 7633 true Chr09: 49235261-49242893 Glycine max
Glyma.09G276900 2.0kb upstream 2.0kb upstream 2000 false Chr09: 49240894-49242893 Glycine max
Glyma.09G276900 2.0kb downstream 2.0kb downstream 7633 true Chr09: 49233261-49240893 Glycine max
Glyma.09G276900 2.0kb downstream 2.0kb downstream 2000 false Chr09: 49233261-49235260 Glycine max
Glyma.09G276900 5.0kb upstream 5.0kb upstream 10633 true Chr09: 49235261-49245893 Glycine max
Glyma.09G276900 5.0kb upstream 5.0kb upstream 5000 false Chr09: 49240894-49245893 Glycine max
Glyma.09G276900 5.0kb downstream 5.0kb downstream 10633 true Chr09: 49230261-49240893 Glycine max
Glyma.09G276900 5.0kb downstream 5.0kb downstream 5000 false Chr09: 49230261-49235260 Glycine max
Glyma.09G276900 10.0kb upstream 10.0kb upstream 15633 true Chr09: 49235261-49250893 Glycine max
Glyma.09G276900 10.0kb upstream 10.0kb upstream 10000 false Chr09: 49240894-49250893 Glycine max
Glyma.09G276900 10.0kb downstream 10.0kb downstream 15633 true Chr09: 49225261-49240893 Glycine max
Glyma.09G276900 10.0kb downstream 10.0kb downstream 10000 false Chr09: 49225261-49235260 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316484 5265 Fabidae View MSA
124067896 5270 Rosid View MSA
123751574 5271 Pentapetalae View MSA
122793638 5272 Eudicot View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.37372 0.0 18.6624   Low
cufflinks 6.16873 0.0 28.0629    
cufflinks 7.36566 0.0 31.3047    
cufflinks 7.44957 0.0 31.6358    
cufflinks 5.02919 0.0 24.2609    
cufflinks 10.0628 0.0 43.4134   High
cufflinks 4.82072 0.0 19.6645    
cufflinks 4.73465 0.0 23.9558    
cufflinks 7.3886 0.0 31.5696    
cufflinks 0.454        
cufflinks 1.23       High
cufflinks 0.718        
cufflinks 0.472        
cufflinks 0.375       Low
cufflinks 0.672        
cufflinks 0.398       Low
cufflinks 1.678       High
cufflinks 0.776        
cufflinks 0.681        
cufflinks 0.361       Low
cufflinks 0.753        
cufflinks 0.384       Low
cufflinks 0.66        
cufflinks 1.103       High
cufflinks 0.37       Low
cufflinks 0.959        

0 Strain