Gene : Glyma.09G274900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23249:SF15 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 4 Genomic Order:  2749
Name:  ? Glyma.09G274900 Secondary Identifier:  ? PAC:30483284
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G274900 0.5kb upstream 0.5kb upstream 3832 true Chr09: 49069946-49073777 Glycine max
Glyma.09G274900 0.5kb upstream 0.5kb upstream 500 false Chr09: 49073278-49073777 Glycine max
Glyma.09G274900 0.5kb downstream 0.5kb downstream 3832 true Chr09: 49069446-49073277 Glycine max
Glyma.09G274900 0.5kb downstream 0.5kb downstream 500 false Chr09: 49069446-49069945 Glycine max
Glyma.09G274900 1.0kb upstream 1.0kb upstream 4332 true Chr09: 49069946-49074277 Glycine max
Glyma.09G274900 1.0kb upstream 1.0kb upstream 1000 false Chr09: 49073278-49074277 Glycine max
Glyma.09G274900 1.0kb downstream 1.0kb downstream 4332 true Chr09: 49068946-49073277 Glycine max
Glyma.09G274900 1.0kb downstream 1.0kb downstream 1000 false Chr09: 49068946-49069945 Glycine max
Glyma.09G274900 2.0kb upstream 2.0kb upstream 5332 true Chr09: 49069946-49075277 Glycine max
Glyma.09G274900 2.0kb upstream 2.0kb upstream 2000 false Chr09: 49073278-49075277 Glycine max
Glyma.09G274900 2.0kb downstream 2.0kb downstream 5332 true Chr09: 49067946-49073277 Glycine max
Glyma.09G274900 2.0kb downstream 2.0kb downstream 2000 false Chr09: 49067946-49069945 Glycine max
Glyma.09G274900 5.0kb upstream 5.0kb upstream 8332 true Chr09: 49069946-49078277 Glycine max
Glyma.09G274900 5.0kb upstream 5.0kb upstream 5000 false Chr09: 49073278-49078277 Glycine max
Glyma.09G274900 5.0kb downstream 5.0kb downstream 8332 true Chr09: 49064946-49073277 Glycine max
Glyma.09G274900 5.0kb downstream 5.0kb downstream 5000 false Chr09: 49064946-49069945 Glycine max
Glyma.09G274900 10.0kb upstream 10.0kb upstream 13332 true Chr09: 49069946-49083277 Glycine max
Glyma.09G274900 10.0kb upstream 10.0kb upstream 10000 false Chr09: 49073278-49083277 Glycine max
Glyma.09G274900 10.0kb downstream 10.0kb downstream 13332 true Chr09: 49059946-49073277 Glycine max
Glyma.09G274900 10.0kb downstream 10.0kb downstream 10000 false Chr09: 49059946-49069945 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122243266 5265 Fabidae Singleton cluster - no MSA
124062773 5270 Rosid View MSA
123740967 5271 Pentapetalae View MSA
122786625 5272 Eudicot View MSA
122043161 5273 Angiosperm View MSA
121347078 5274 Embryophyte View MSA
123424121 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.9757 0.0 69.8294   Low
cufflinks 19.347 0.0 87.8986    
cufflinks 14.6262 0.0 70.3917   Low
cufflinks 19.3245 0.0 87.5377    
cufflinks 25.6577 0.0 110.321 High  
cufflinks 26.8155 0.0 112.002 High High
cufflinks 15.6277 0.0 76.3837    
cufflinks 22.5248 0.0 95.5235 High  
cufflinks 30.7774 0.0 126.432 High High
cufflinks 1.034        
cufflinks 0.128       Low
cufflinks 0.642        
cufflinks 1.337       High
cufflinks 1.943       High
cufflinks 0.358        
cufflinks 0.543        
cufflinks 0.298        
cufflinks 1.05        
cufflinks 0.84        
cufflinks 0.563        
cufflinks 0.199       Low
cufflinks 0.601        
cufflinks 0.635        
cufflinks 0.169       Low
cufflinks 0.562        
cufflinks 0.362        

0 Strain