Gene : Glyma.09G260600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31500:SF10 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN Genomic Order:  2606
Name:  ? Glyma.09G260600 Secondary Identifier:  ? PAC:30484314
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G260600 0.5kb upstream 0.5kb upstream 7709 true Chr09: 47883084-47890792 Glycine max
Glyma.09G260600 0.5kb upstream 0.5kb upstream 500 false Chr09: 47883084-47883583 Glycine max
Glyma.09G260600 0.5kb downstream 0.5kb downstream 7709 true Chr09: 47883584-47891292 Glycine max
Glyma.09G260600 0.5kb downstream 0.5kb downstream 500 false Chr09: 47890793-47891292 Glycine max
Glyma.09G260600 1.0kb upstream 1.0kb upstream 8209 true Chr09: 47882584-47890792 Glycine max
Glyma.09G260600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 47882584-47883583 Glycine max
Glyma.09G260600 1.0kb downstream 1.0kb downstream 8209 true Chr09: 47883584-47891792 Glycine max
Glyma.09G260600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 47890793-47891792 Glycine max
Glyma.09G260600 2.0kb upstream 2.0kb upstream 9209 true Chr09: 47881584-47890792 Glycine max
Glyma.09G260600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 47881584-47883583 Glycine max
Glyma.09G260600 2.0kb downstream 2.0kb downstream 9209 true Chr09: 47883584-47892792 Glycine max
Glyma.09G260600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 47890793-47892792 Glycine max
Glyma.09G260600 5.0kb upstream 5.0kb upstream 12209 true Chr09: 47878584-47890792 Glycine max
Glyma.09G260600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 47878584-47883583 Glycine max
Glyma.09G260600 5.0kb downstream 5.0kb downstream 12209 true Chr09: 47883584-47895792 Glycine max
Glyma.09G260600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 47890793-47895792 Glycine max
Glyma.09G260600 10.0kb upstream 10.0kb upstream 17209 true Chr09: 47873584-47890792 Glycine max
Glyma.09G260600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 47873584-47883583 Glycine max
Glyma.09G260600 10.0kb downstream 10.0kb downstream 17209 true Chr09: 47883584-47900792 Glycine max
Glyma.09G260600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 47890793-47900792 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041209 5273 Angiosperm View MSA
122311157 5265 Fabidae View MSA
124064168 5270 Rosid View MSA
123741988 5271 Pentapetalae View MSA
122789787 5272 Eudicot View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.7788 0.0 112.897 High  
cufflinks 58.8422 0.0 221.608 High High
cufflinks 21.7014 0.0 76.5597 High  
cufflinks 7.73453 0.0 28.0624    
cufflinks 1.96078 0.0 6.79231   Low
cufflinks 2.78117 0.0 8.56933    
cufflinks 8.24665 0.0 29.5994    
cufflinks 33.9277 0.0 127.309 High  
cufflinks 2.19215 0.0 9.56113   Low
cufflinks 11.0     High  
cufflinks 0.017     Low Low
cufflinks 3.972        
cufflinks 0.032     Low Low
cufflinks 0.095        
cufflinks 0.235        
cufflinks 14.22     High  
cufflinks 0.164        
cufflinks 8.175     High  
cufflinks 6.488        
cufflinks 23.326     High High
cufflinks 0.016     Low Low
cufflinks 20.252     High High
cufflinks 14.211     High  
cufflinks 0.033     Low Low
cufflinks 18.751     High High
cufflinks 0.02     Low Low

0 Strain