Gene : Glyma.10G013900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR30620:SF4 - BETA-D-XYLOSIDASE 2-RELATED Genomic Order:  139
Name:  ? Glyma.10G013900 Secondary Identifier:  ? PAC:30477305
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G013900 0.5kb upstream 0.5kb upstream 6617 true Chr10: 1234666-1241282 Glycine max
Glyma.10G013900 0.5kb upstream 0.5kb upstream 500 false Chr10: 1234666-1235165 Glycine max
Glyma.10G013900 0.5kb downstream 0.5kb downstream 6617 true Chr10: 1235166-1241782 Glycine max
Glyma.10G013900 0.5kb downstream 0.5kb downstream 500 false Chr10: 1241283-1241782 Glycine max
Glyma.10G013900 1.0kb upstream 1.0kb upstream 7117 true Chr10: 1234166-1241282 Glycine max
Glyma.10G013900 1.0kb upstream 1.0kb upstream 1000 false Chr10: 1234166-1235165 Glycine max
Glyma.10G013900 1.0kb downstream 1.0kb downstream 7117 true Chr10: 1235166-1242282 Glycine max
Glyma.10G013900 1.0kb downstream 1.0kb downstream 1000 false Chr10: 1241283-1242282 Glycine max
Glyma.10G013900 2.0kb upstream 2.0kb upstream 8117 true Chr10: 1233166-1241282 Glycine max
Glyma.10G013900 2.0kb upstream 2.0kb upstream 2000 false Chr10: 1233166-1235165 Glycine max
Glyma.10G013900 2.0kb downstream 2.0kb downstream 8117 true Chr10: 1235166-1243282 Glycine max
Glyma.10G013900 2.0kb downstream 2.0kb downstream 2000 false Chr10: 1241283-1243282 Glycine max
Glyma.10G013900 5.0kb upstream 5.0kb upstream 11117 true Chr10: 1230166-1241282 Glycine max
Glyma.10G013900 5.0kb upstream 5.0kb upstream 5000 false Chr10: 1230166-1235165 Glycine max
Glyma.10G013900 5.0kb downstream 5.0kb downstream 11117 true Chr10: 1235166-1246282 Glycine max
Glyma.10G013900 5.0kb downstream 5.0kb downstream 5000 false Chr10: 1241283-1246282 Glycine max
Glyma.10G013900 10.0kb upstream 10.0kb upstream 16117 true Chr10: 1225166-1241282 Glycine max
Glyma.10G013900 10.0kb upstream 10.0kb upstream 10000 false Chr10: 1225166-1235165 Glycine max
Glyma.10G013900 10.0kb downstream 10.0kb downstream 16117 true Chr10: 1235166-1251282 Glycine max
Glyma.10G013900 10.0kb downstream 10.0kb downstream 10000 false Chr10: 1241283-1251282 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296472 5265 Fabidae View MSA
124068903 5270 Rosid View MSA
123744774 5271 Pentapetalae View MSA
122789153 5272 Eudicot View MSA
122047485 5273 Angiosperm View MSA
121349595 5274 Embryophyte View MSA
123381370 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.363857 0.0 1.33111    
cufflinks 1.31714 0.0 4.29659    
cufflinks 0.437592 0.0 1.58484    
cufflinks 5.43463 0.0 14.8618    
cufflinks 3.09932 0.0 8.93226    
cufflinks 0.34291 0.0 1.25811    
cufflinks 0.108353 0.0 0.419231 Low Low
cufflinks 27.4975 0.0 76.8261 High High
cufflinks 3.35327 0.0 9.58989    
cufflinks 15.219     High High
cufflinks 0.194       Low
cufflinks 0.415        
cufflinks 1.255        
cufflinks 0.735        
cufflinks 0.064       Low
cufflinks 1.058        
cufflinks 1.192        
cufflinks 0.622        
cufflinks 0.767        
cufflinks 0.951        
cufflinks 0.259        
cufflinks 1.314        
cufflinks 1.168        
cufflinks 0.259        
cufflinks 0.91        
cufflinks 0.429        

0 Strain