Gene : Glyma.10G046400 G. max Wm82.a2.v1
Defline:  (1 of 3) PF04571//PF08235//PF16876 - lipin, N-terminal conserved region (Lipin_N) // LNS2 (Lipin/Ned1/Smp2) (LNS2) // Lipin/Ned1/Smp2 multi-domain protein middle domain (Lipin_mid) Genomic Order:  464
Name:  ? Glyma.10G046400 Secondary Identifier:  ? PAC:30477067
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRIGLSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G046400 0.5kb upstream 0.5kb upstream 9497 true Chr10: 4155215-4164711 Glycine max
Glyma.10G046400 0.5kb upstream 0.5kb upstream 500 false Chr10: 4164212-4164711 Glycine max
Glyma.10G046400 0.5kb downstream 0.5kb downstream 9497 true Chr10: 4154715-4164211 Glycine max
Glyma.10G046400 0.5kb downstream 0.5kb downstream 500 false Chr10: 4154715-4155214 Glycine max
Glyma.10G046400 1.0kb upstream 1.0kb upstream 9997 true Chr10: 4155215-4165211 Glycine max
Glyma.10G046400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 4164212-4165211 Glycine max
Glyma.10G046400 1.0kb downstream 1.0kb downstream 9997 true Chr10: 4154215-4164211 Glycine max
Glyma.10G046400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 4154215-4155214 Glycine max
Glyma.10G046400 2.0kb upstream 2.0kb upstream 10997 true Chr10: 4155215-4166211 Glycine max
Glyma.10G046400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 4164212-4166211 Glycine max
Glyma.10G046400 2.0kb downstream 2.0kb downstream 10997 true Chr10: 4153215-4164211 Glycine max
Glyma.10G046400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 4153215-4155214 Glycine max
Glyma.10G046400 5.0kb upstream 5.0kb upstream 13997 true Chr10: 4155215-4169211 Glycine max
Glyma.10G046400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 4164212-4169211 Glycine max
Glyma.10G046400 5.0kb downstream 5.0kb downstream 13997 true Chr10: 4150215-4164211 Glycine max
Glyma.10G046400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 4150215-4155214 Glycine max
Glyma.10G046400 10.0kb upstream 10.0kb upstream 18997 true Chr10: 4155215-4174211 Glycine max
Glyma.10G046400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 4164212-4174211 Glycine max
Glyma.10G046400 10.0kb downstream 10.0kb downstream 18997 true Chr10: 4145215-4164211 Glycine max
Glyma.10G046400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 4145215-4155214 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311900 5265 Fabidae View MSA
124065604 5270 Rosid View MSA
123741487 5271 Pentapetalae View MSA
122792824 5272 Eudicot View MSA
122048354 5273 Angiosperm View MSA
121350822 5274 Embryophyte View MSA
123381897 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.83868 0.0 17.0806    
cufflinks 3.66807 0.0 11.6417    
cufflinks 5.11467 0.0 17.8278   High
cufflinks 3.40502 0.0 12.7898    
cufflinks 4.99111 0.0 17.6138   High
cufflinks 3.45344 0.0 12.8472    
cufflinks 2.11541 0.0 9.01288   Low
cufflinks 2.59642 0.0 8.90718   Low
cufflinks 4.13072 0.0 14.8798    
cufflinks 0.96       Low
cufflinks 2.274        
cufflinks 1.246        
cufflinks 1.297        
cufflinks 1.387        
cufflinks 5.138       High
cufflinks 1.329        
cufflinks 1.316        
cufflinks 1.605        
cufflinks 1.418        
cufflinks 1.278        
cufflinks 1.74        
cufflinks 1.518        
cufflinks 1.74        
cufflinks 2.475       High
cufflinks 1.205        
cufflinks 2.485       High

0 Strain