Gene : Glyma.10G040900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22904:SF312 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  409
Name:  ? Glyma.10G040900 Secondary Identifier:  ? PAC:30473867
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G040900 0.5kb upstream 0.5kb upstream 5486 true Chr10: 3590602-3596087 Glycine max
Glyma.10G040900 0.5kb upstream 0.5kb upstream 500 false Chr10: 3590602-3591101 Glycine max
Glyma.10G040900 0.5kb downstream 0.5kb downstream 5486 true Chr10: 3591102-3596587 Glycine max
Glyma.10G040900 0.5kb downstream 0.5kb downstream 500 false Chr10: 3596088-3596587 Glycine max
Glyma.10G040900 1.0kb upstream 1.0kb upstream 5986 true Chr10: 3590102-3596087 Glycine max
Glyma.10G040900 1.0kb upstream 1.0kb upstream 1000 false Chr10: 3590102-3591101 Glycine max
Glyma.10G040900 1.0kb downstream 1.0kb downstream 5986 true Chr10: 3591102-3597087 Glycine max
Glyma.10G040900 1.0kb downstream 1.0kb downstream 1000 false Chr10: 3596088-3597087 Glycine max
Glyma.10G040900 2.0kb upstream 2.0kb upstream 6986 true Chr10: 3589102-3596087 Glycine max
Glyma.10G040900 2.0kb upstream 2.0kb upstream 2000 false Chr10: 3589102-3591101 Glycine max
Glyma.10G040900 2.0kb downstream 2.0kb downstream 6986 true Chr10: 3591102-3598087 Glycine max
Glyma.10G040900 2.0kb downstream 2.0kb downstream 2000 false Chr10: 3596088-3598087 Glycine max
Glyma.10G040900 5.0kb upstream 5.0kb upstream 9986 true Chr10: 3586102-3596087 Glycine max
Glyma.10G040900 5.0kb upstream 5.0kb upstream 5000 false Chr10: 3586102-3591101 Glycine max
Glyma.10G040900 5.0kb downstream 5.0kb downstream 9986 true Chr10: 3591102-3601087 Glycine max
Glyma.10G040900 5.0kb downstream 5.0kb downstream 5000 false Chr10: 3596088-3601087 Glycine max
Glyma.10G040900 10.0kb upstream 10.0kb upstream 14986 true Chr10: 3581102-3596087 Glycine max
Glyma.10G040900 10.0kb upstream 10.0kb upstream 10000 false Chr10: 3581102-3591101 Glycine max
Glyma.10G040900 10.0kb downstream 10.0kb downstream 14986 true Chr10: 3591102-3606087 Glycine max
Glyma.10G040900 10.0kb downstream 10.0kb downstream 10000 false Chr10: 3596088-3606087 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299724 5265 Fabidae View MSA
124068096 5270 Rosid View MSA
123752266 5271 Pentapetalae View MSA
122787898 5272 Eudicot View MSA
122046706 5273 Angiosperm View MSA
121343893 5274 Embryophyte View MSA
123425417 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.22359 0.0 7.15828   Low
cufflinks 3.54013 0.0 10.6362    
cufflinks 1.92468 0.0 6.27406   Low
cufflinks 3.1788 0.0 9.6978    
cufflinks 3.83117 0.0 11.4343    
cufflinks 2.88334 0.0 8.93792    
cufflinks 5.36251 0.0 15.3407   High
cufflinks 2.91312 0.0 8.98807    
cufflinks 3.47635 0.0 10.4786    
cufflinks 0.97        
cufflinks 0.245       Low
cufflinks 1.244        
cufflinks 2.299       High
cufflinks 3.046       High
cufflinks 0.7        
cufflinks 0.707        
cufflinks 1.109        
cufflinks 1.664        
cufflinks 1.513        
cufflinks 0.741        
cufflinks 0.5        
cufflinks 0.82        
cufflinks 1.283        
cufflinks 0.382       Low
cufflinks 0.761        
cufflinks 0.787        

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