Gene : Glyma.10G043900 G. max Wm82.a2.v1
Defline:  (1 of 6) PF12854//PF13041//PF13812 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  439
Name:  ? Glyma.10G043900 Secondary Identifier:  ? PAC:30476190
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G043900 0.5kb upstream 0.5kb upstream 2754 true Chr10: 3945714-3948467 Glycine max
Glyma.10G043900 0.5kb upstream 0.5kb upstream 500 false Chr10: 3945714-3946213 Glycine max
Glyma.10G043900 0.5kb downstream 0.5kb downstream 2754 true Chr10: 3946214-3948967 Glycine max
Glyma.10G043900 0.5kb downstream 0.5kb downstream 500 false Chr10: 3948468-3948967 Glycine max
Glyma.10G043900 1.0kb upstream 1.0kb upstream 3254 true Chr10: 3945214-3948467 Glycine max
Glyma.10G043900 1.0kb upstream 1.0kb upstream 1000 false Chr10: 3945214-3946213 Glycine max
Glyma.10G043900 1.0kb downstream 1.0kb downstream 3254 true Chr10: 3946214-3949467 Glycine max
Glyma.10G043900 1.0kb downstream 1.0kb downstream 1000 false Chr10: 3948468-3949467 Glycine max
Glyma.10G043900 2.0kb upstream 2.0kb upstream 4254 true Chr10: 3944214-3948467 Glycine max
Glyma.10G043900 2.0kb upstream 2.0kb upstream 2000 false Chr10: 3944214-3946213 Glycine max
Glyma.10G043900 2.0kb downstream 2.0kb downstream 4254 true Chr10: 3946214-3950467 Glycine max
Glyma.10G043900 2.0kb downstream 2.0kb downstream 2000 false Chr10: 3948468-3950467 Glycine max
Glyma.10G043900 5.0kb upstream 5.0kb upstream 7254 true Chr10: 3941214-3948467 Glycine max
Glyma.10G043900 5.0kb upstream 5.0kb upstream 5000 false Chr10: 3941214-3946213 Glycine max
Glyma.10G043900 5.0kb downstream 5.0kb downstream 7254 true Chr10: 3946214-3953467 Glycine max
Glyma.10G043900 5.0kb downstream 5.0kb downstream 5000 false Chr10: 3948468-3953467 Glycine max
Glyma.10G043900 10.0kb upstream 10.0kb upstream 12254 true Chr10: 3936214-3948467 Glycine max
Glyma.10G043900 10.0kb upstream 10.0kb upstream 10000 false Chr10: 3936214-3946213 Glycine max
Glyma.10G043900 10.0kb downstream 10.0kb downstream 12254 true Chr10: 3946214-3958467 Glycine max
Glyma.10G043900 10.0kb downstream 10.0kb downstream 10000 false Chr10: 3948468-3958467 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304408 5265 Fabidae View MSA
124068324 5270 Rosid View MSA
123737648 5271 Pentapetalae View MSA
122793672 5272 Eudicot View MSA
122045784 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.44678 0.0 7.43918    
cufflinks 2.30002 0.0 7.08598    
cufflinks 1.73041 0.0 5.55247    
cufflinks 2.37362 0.0 7.27331    
cufflinks 1.35129 0.0 4.45666    
cufflinks 0.337488 0.0 1.24977   Low
cufflinks 2.44153 0.0 7.41904    
cufflinks 1.71345 0.0 5.4996    
cufflinks 1.53139 0.0 4.98183    
cufflinks 1.135        
cufflinks 0.523       Low
cufflinks 2.709        
cufflinks 1.202        
cufflinks 1.705        
cufflinks 1.239        
cufflinks 4.036        
cufflinks 1.17        
cufflinks 2.34        
cufflinks 3.515        
cufflinks 5.267       High
cufflinks 0.697       Low
cufflinks 5.121       High
cufflinks 4.546       High
cufflinks 0.493       Low
cufflinks 4.492       High
cufflinks 0.54       Low

0 Strain