Gene : Glyma.10G029500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23083//PTHR23083:SF430 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Genomic Order:  295
Name:  ? Glyma.10G029500 Secondary Identifier:  ? PAC:30477155
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G029500 0.5kb upstream 0.5kb upstream 5219 true Chr10: 2566405-2571623 Glycine max
Glyma.10G029500 0.5kb upstream 0.5kb upstream 500 false Chr10: 2566405-2566904 Glycine max
Glyma.10G029500 0.5kb downstream 0.5kb downstream 5219 true Chr10: 2566905-2572123 Glycine max
Glyma.10G029500 0.5kb downstream 0.5kb downstream 500 false Chr10: 2571624-2572123 Glycine max
Glyma.10G029500 1.0kb upstream 1.0kb upstream 5719 true Chr10: 2565905-2571623 Glycine max
Glyma.10G029500 1.0kb upstream 1.0kb upstream 1000 false Chr10: 2565905-2566904 Glycine max
Glyma.10G029500 1.0kb downstream 1.0kb downstream 5719 true Chr10: 2566905-2572623 Glycine max
Glyma.10G029500 1.0kb downstream 1.0kb downstream 1000 false Chr10: 2571624-2572623 Glycine max
Glyma.10G029500 2.0kb upstream 2.0kb upstream 6719 true Chr10: 2564905-2571623 Glycine max
Glyma.10G029500 2.0kb upstream 2.0kb upstream 2000 false Chr10: 2564905-2566904 Glycine max
Glyma.10G029500 2.0kb downstream 2.0kb downstream 6719 true Chr10: 2566905-2573623 Glycine max
Glyma.10G029500 2.0kb downstream 2.0kb downstream 2000 false Chr10: 2571624-2573623 Glycine max
Glyma.10G029500 5.0kb upstream 5.0kb upstream 9719 true Chr10: 2561905-2571623 Glycine max
Glyma.10G029500 5.0kb upstream 5.0kb upstream 5000 false Chr10: 2561905-2566904 Glycine max
Glyma.10G029500 5.0kb downstream 5.0kb downstream 9719 true Chr10: 2566905-2576623 Glycine max
Glyma.10G029500 5.0kb downstream 5.0kb downstream 5000 false Chr10: 2571624-2576623 Glycine max
Glyma.10G029500 10.0kb upstream 10.0kb upstream 14719 true Chr10: 2556905-2571623 Glycine max
Glyma.10G029500 10.0kb upstream 10.0kb upstream 10000 false Chr10: 2556905-2566904 Glycine max
Glyma.10G029500 10.0kb downstream 10.0kb downstream 14719 true Chr10: 2566905-2581623 Glycine max
Glyma.10G029500 10.0kb downstream 10.0kb downstream 10000 false Chr10: 2571624-2581623 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311802 5265 Fabidae View MSA
124067211 5270 Rosid View MSA
123736449 5271 Pentapetalae View MSA
122791589 5272 Eudicot View MSA
122042735 5273 Angiosperm View MSA
121349439 5274 Embryophyte View MSA
123381312 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.36739 0.0 11.967    
cufflinks 8.38079 0.0 22.3627    
cufflinks 3.24861 0.0 9.07957   Low
cufflinks 9.65767 0.0 25.7757   High
cufflinks 6.53548 0.0 17.5392    
cufflinks 4.43954 0.0 12.1377    
cufflinks 4.87319 0.0 13.273    
cufflinks 12.156 0.0 32.607   High
cufflinks 5.77864 0.0 15.565    
cufflinks 9.923     High High
cufflinks 1.717        
cufflinks 4.518        
cufflinks 5.321        
cufflinks 5.035        
cufflinks 0.568       Low
cufflinks 3.477        
cufflinks 1.953        
cufflinks 7.368     High High
cufflinks 7.524     High High
cufflinks 4.066        
cufflinks 1.522       Low
cufflinks 4.715        
cufflinks 3.335        
cufflinks 2.137        
cufflinks 3.804        
cufflinks 1.855        

0 Strain