Gene : Glyma.10G086700 G. max Wm82.a2.v1
Defline:  (1 of 4) 5.2.1.13 - Prolycopene isomerase / CRTISO Genomic Order:  867
Name:  ? Glyma.10G086700 Secondary Identifier:  ? PAC:30475836
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CAROTENOID-PWY Glycine max pathologic  
Gmax PWY-6475 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G086700 0.5kb upstream 0.5kb upstream 7407 true Chr10: 11167097-11174503 Glycine max
Glyma.10G086700 0.5kb upstream 0.5kb upstream 500 false Chr10: 11167097-11167596 Glycine max
Glyma.10G086700 0.5kb downstream 0.5kb downstream 7407 true Chr10: 11167597-11175003 Glycine max
Glyma.10G086700 0.5kb downstream 0.5kb downstream 500 false Chr10: 11174504-11175003 Glycine max
Glyma.10G086700 1.0kb upstream 1.0kb upstream 7907 true Chr10: 11166597-11174503 Glycine max
Glyma.10G086700 1.0kb upstream 1.0kb upstream 1000 false Chr10: 11166597-11167596 Glycine max
Glyma.10G086700 1.0kb downstream 1.0kb downstream 7907 true Chr10: 11167597-11175503 Glycine max
Glyma.10G086700 1.0kb downstream 1.0kb downstream 1000 false Chr10: 11174504-11175503 Glycine max
Glyma.10G086700 2.0kb upstream 2.0kb upstream 8907 true Chr10: 11165597-11174503 Glycine max
Glyma.10G086700 2.0kb upstream 2.0kb upstream 2000 false Chr10: 11165597-11167596 Glycine max
Glyma.10G086700 2.0kb downstream 2.0kb downstream 8907 true Chr10: 11167597-11176503 Glycine max
Glyma.10G086700 2.0kb downstream 2.0kb downstream 2000 false Chr10: 11174504-11176503 Glycine max
Glyma.10G086700 5.0kb upstream 5.0kb upstream 11907 true Chr10: 11162597-11174503 Glycine max
Glyma.10G086700 5.0kb upstream 5.0kb upstream 5000 false Chr10: 11162597-11167596 Glycine max
Glyma.10G086700 5.0kb downstream 5.0kb downstream 11907 true Chr10: 11167597-11179503 Glycine max
Glyma.10G086700 5.0kb downstream 5.0kb downstream 5000 false Chr10: 11174504-11179503 Glycine max
Glyma.10G086700 10.0kb upstream 10.0kb upstream 16907 true Chr10: 11157597-11174503 Glycine max
Glyma.10G086700 10.0kb upstream 10.0kb upstream 10000 false Chr10: 11157597-11167596 Glycine max
Glyma.10G086700 10.0kb downstream 10.0kb downstream 16907 true Chr10: 11167597-11184503 Glycine max
Glyma.10G086700 10.0kb downstream 10.0kb downstream 10000 false Chr10: 11174504-11184503 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026345 5273 Angiosperm View MSA
122309577 5265 Fabidae View MSA
124064637 5270 Rosid View MSA
123738016 5271 Pentapetalae View MSA
122791420 5272 Eudicot View MSA
121345795 5274 Embryophyte View MSA
123425130 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.81464 0.0 16.0777    
cufflinks 4.02515 0.0 11.5645    
cufflinks 7.36277 0.0 19.9768    
cufflinks 11.9734 0.0 31.9643   High
cufflinks 3.73091 0.0 10.8248    
cufflinks 4.86413 0.0 13.6715    
cufflinks 6.16832 0.0 16.9619    
cufflinks 2.59635 0.0 7.88853   Low
cufflinks 4.76689 0.0 13.4171    
cufflinks 1.418        
cufflinks 0.558       Low
cufflinks 3.731       High
cufflinks 2.077        
cufflinks 1.897        
cufflinks 0.621       Low
cufflinks 2.479        
cufflinks 1.14        
cufflinks 4.11       High
cufflinks 2.422        
cufflinks 2.613        
cufflinks 0.682       Low
cufflinks 2.598        
cufflinks 3.151        
cufflinks 0.79       Low
cufflinks 2.614        
cufflinks 1.086        

0 Strain