Gene : Glyma.10G053500 G. max Wm82.a2.v1
Defline:  (1 of 20) PF02362//PF06507 - B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  535
Name:  ? Glyma.10G053500 Secondary Identifier:  ? PAC:30475242
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G053500 0.5kb upstream 0.5kb upstream 5804 true Chr10: 4838661-4844464 Glycine max
Glyma.10G053500 0.5kb upstream 0.5kb upstream 500 false Chr10: 4843965-4844464 Glycine max
Glyma.10G053500 0.5kb downstream 0.5kb downstream 5804 true Chr10: 4838161-4843964 Glycine max
Glyma.10G053500 0.5kb downstream 0.5kb downstream 500 false Chr10: 4838161-4838660 Glycine max
Glyma.10G053500 1.0kb upstream 1.0kb upstream 6304 true Chr10: 4838661-4844964 Glycine max
Glyma.10G053500 1.0kb upstream 1.0kb upstream 1000 false Chr10: 4843965-4844964 Glycine max
Glyma.10G053500 1.0kb downstream 1.0kb downstream 6304 true Chr10: 4837661-4843964 Glycine max
Glyma.10G053500 1.0kb downstream 1.0kb downstream 1000 false Chr10: 4837661-4838660 Glycine max
Glyma.10G053500 2.0kb upstream 2.0kb upstream 7304 true Chr10: 4838661-4845964 Glycine max
Glyma.10G053500 2.0kb upstream 2.0kb upstream 2000 false Chr10: 4843965-4845964 Glycine max
Glyma.10G053500 2.0kb downstream 2.0kb downstream 7304 true Chr10: 4836661-4843964 Glycine max
Glyma.10G053500 2.0kb downstream 2.0kb downstream 2000 false Chr10: 4836661-4838660 Glycine max
Glyma.10G053500 5.0kb upstream 5.0kb upstream 10304 true Chr10: 4838661-4848964 Glycine max
Glyma.10G053500 5.0kb upstream 5.0kb upstream 5000 false Chr10: 4843965-4848964 Glycine max
Glyma.10G053500 5.0kb downstream 5.0kb downstream 10304 true Chr10: 4833661-4843964 Glycine max
Glyma.10G053500 5.0kb downstream 5.0kb downstream 5000 false Chr10: 4833661-4838660 Glycine max
Glyma.10G053500 10.0kb upstream 10.0kb upstream 15304 true Chr10: 4838661-4853964 Glycine max
Glyma.10G053500 10.0kb upstream 10.0kb upstream 10000 false Chr10: 4843965-4853964 Glycine max
Glyma.10G053500 10.0kb downstream 10.0kb downstream 15304 true Chr10: 4828661-4843964 Glycine max
Glyma.10G053500 10.0kb downstream 10.0kb downstream 10000 false Chr10: 4828661-4838660 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305434 5265 Fabidae View MSA
124069871 5270 Rosid View MSA
123753762 5271 Pentapetalae View MSA
122789105 5272 Eudicot View MSA
122049915 5273 Angiosperm View MSA
121351445 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.50781 0.0 17.5178   High
cufflinks 4.32383 0.0 11.9424    
cufflinks 6.95813 0.0 18.6746   High
cufflinks 5.69315 0.0 15.4197    
cufflinks 4.37818 0.0 12.0836    
cufflinks 3.43934 0.0 9.69574    
cufflinks 3.42507 0.0 9.69018    
cufflinks 3.11212 0.0 8.87255    
cufflinks 2.67374 0.0 7.76939   Low
cufflinks 3.929        
cufflinks 0.337       Low
cufflinks 7.156       High
cufflinks 2.327        
cufflinks 3.011        
cufflinks 0.43       Low
cufflinks 4.509        
cufflinks 1.958        
cufflinks 6.114        
cufflinks 4.655        
cufflinks 3.873        
cufflinks 0.245       Low
cufflinks 5.31        
cufflinks 5.451        
cufflinks 0.495       Low
cufflinks 4.371        
cufflinks 0.781        

0 Strain