Gene : Glyma.10G054300 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  543
Name:  ? Glyma.10G054300 Secondary Identifier:  ? PAC:30473791
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G054300 0.5kb upstream 0.5kb upstream 1653 true Chr10: 4938447-4940099 Glycine max
Glyma.10G054300 0.5kb upstream 0.5kb upstream 500 false Chr10: 4938447-4938946 Glycine max
Glyma.10G054300 0.5kb downstream 0.5kb downstream 1653 true Chr10: 4938947-4940599 Glycine max
Glyma.10G054300 0.5kb downstream 0.5kb downstream 500 false Chr10: 4940100-4940599 Glycine max
Glyma.10G054300 1.0kb upstream 1.0kb upstream 2153 true Chr10: 4937947-4940099 Glycine max
Glyma.10G054300 1.0kb upstream 1.0kb upstream 1000 false Chr10: 4937947-4938946 Glycine max
Glyma.10G054300 1.0kb downstream 1.0kb downstream 2153 true Chr10: 4938947-4941099 Glycine max
Glyma.10G054300 1.0kb downstream 1.0kb downstream 1000 false Chr10: 4940100-4941099 Glycine max
Glyma.10G054300 2.0kb upstream 2.0kb upstream 3153 true Chr10: 4936947-4940099 Glycine max
Glyma.10G054300 2.0kb upstream 2.0kb upstream 2000 false Chr10: 4936947-4938946 Glycine max
Glyma.10G054300 2.0kb downstream 2.0kb downstream 3153 true Chr10: 4938947-4942099 Glycine max
Glyma.10G054300 2.0kb downstream 2.0kb downstream 2000 false Chr10: 4940100-4942099 Glycine max
Glyma.10G054300 5.0kb upstream 5.0kb upstream 6153 true Chr10: 4933947-4940099 Glycine max
Glyma.10G054300 5.0kb upstream 5.0kb upstream 5000 false Chr10: 4933947-4938946 Glycine max
Glyma.10G054300 5.0kb downstream 5.0kb downstream 6153 true Chr10: 4938947-4945099 Glycine max
Glyma.10G054300 5.0kb downstream 5.0kb downstream 5000 false Chr10: 4940100-4945099 Glycine max
Glyma.10G054300 10.0kb upstream 10.0kb upstream 11153 true Chr10: 4928947-4940099 Glycine max
Glyma.10G054300 10.0kb upstream 10.0kb upstream 10000 false Chr10: 4928947-4938946 Glycine max
Glyma.10G054300 10.0kb downstream 10.0kb downstream 11153 true Chr10: 4938947-4950099 Glycine max
Glyma.10G054300 10.0kb downstream 10.0kb downstream 10000 false Chr10: 4940100-4950099 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315897 5265 Fabidae View MSA
124039699 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.418943 0.0 1.62037   High
cufflinks 0.27186 0.0 1.06954    
cufflinks 0.0516366 0.0 0.220934 Low Low
cufflinks 0.347159 0.0 1.35286    
cufflinks 0.210847 0.0 0.83665 Low  
cufflinks 0.103364 0.0 0.422607 Low  
cufflinks 0.262101 0.0 1.03147    
cufflinks 0.10959 0.0 0.446629 Low  
cufflinks 0.136263 0.0 0.549531 Low  
cufflinks 0.115       Low
cufflinks 0.325        
cufflinks 0.34        
cufflinks 0.141        
cufflinks 0.459       High
cufflinks 0.15        
cufflinks 0.384        
cufflinks 0.382        
cufflinks 0.44       High
cufflinks 0.288        
cufflinks 0.097       Low
cufflinks 0.073       Low
cufflinks 0.221        
cufflinks 0.353        
cufflinks 0.164        
cufflinks 0.281        
cufflinks 0.214        

0 Strain