Gene : Glyma.10G055100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21286 - NUCLEAR PORE COMPLEX PROTEIN NUP160 Genomic Order:  551
Name:  ? Glyma.10G055100 Secondary Identifier:  ? PAC:30473879
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G055100 0.5kb upstream 0.5kb upstream 18162 true Chr10: 5014829-5032990 Glycine max
Glyma.10G055100 0.5kb upstream 0.5kb upstream 500 false Chr10: 5014829-5015328 Glycine max
Glyma.10G055100 0.5kb downstream 0.5kb downstream 18162 true Chr10: 5015329-5033490 Glycine max
Glyma.10G055100 0.5kb downstream 0.5kb downstream 500 false Chr10: 5032991-5033490 Glycine max
Glyma.10G055100 1.0kb upstream 1.0kb upstream 18662 true Chr10: 5014329-5032990 Glycine max
Glyma.10G055100 1.0kb upstream 1.0kb upstream 1000 false Chr10: 5014329-5015328 Glycine max
Glyma.10G055100 1.0kb downstream 1.0kb downstream 18662 true Chr10: 5015329-5033990 Glycine max
Glyma.10G055100 1.0kb downstream 1.0kb downstream 1000 false Chr10: 5032991-5033990 Glycine max
Glyma.10G055100 2.0kb upstream 2.0kb upstream 19662 true Chr10: 5013329-5032990 Glycine max
Glyma.10G055100 2.0kb upstream 2.0kb upstream 2000 false Chr10: 5013329-5015328 Glycine max
Glyma.10G055100 2.0kb downstream 2.0kb downstream 19662 true Chr10: 5015329-5034990 Glycine max
Glyma.10G055100 2.0kb downstream 2.0kb downstream 2000 false Chr10: 5032991-5034990 Glycine max
Glyma.10G055100 5.0kb upstream 5.0kb upstream 22662 true Chr10: 5010329-5032990 Glycine max
Glyma.10G055100 5.0kb upstream 5.0kb upstream 5000 false Chr10: 5010329-5015328 Glycine max
Glyma.10G055100 5.0kb downstream 5.0kb downstream 22662 true Chr10: 5015329-5037990 Glycine max
Glyma.10G055100 5.0kb downstream 5.0kb downstream 5000 false Chr10: 5032991-5037990 Glycine max
Glyma.10G055100 10.0kb upstream 10.0kb upstream 27662 true Chr10: 5005329-5032990 Glycine max
Glyma.10G055100 10.0kb upstream 10.0kb upstream 10000 false Chr10: 5005329-5015328 Glycine max
Glyma.10G055100 10.0kb downstream 10.0kb downstream 27662 true Chr10: 5015329-5042990 Glycine max
Glyma.10G055100 10.0kb downstream 10.0kb downstream 10000 false Chr10: 5032991-5042990 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300397 5265 Fabidae View MSA
124050193 5270 Rosid View MSA
123749967 5271 Pentapetalae View MSA
122790000 5272 Eudicot View MSA
122043780 5273 Angiosperm View MSA
121346160 5274 Embryophyte View MSA
123425689 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.06058 0.0 21.0649    
cufflinks 5.73186 0.0 19.9332    
cufflinks 4.01203 0.0 17.6859    
cufflinks 5.22895 0.0 18.6199    
cufflinks 6.05493 0.0 21.1421    
cufflinks 2.16967 0.0 7.71177   Low
cufflinks 5.82646 0.0 20.5628    
cufflinks 4.42165 0.0 13.3481    
cufflinks 5.25448 0.0 18.4517    
cufflinks 0.769        
cufflinks 0.125       Low
cufflinks 1.123        
cufflinks 1.222        
cufflinks 1.484       High
cufflinks 0.5        
cufflinks 0.821        
cufflinks 0.627        
cufflinks 1.264        
cufflinks 1.691       High
cufflinks 0.584        
cufflinks 0.253       Low
cufflinks 0.775        
cufflinks 1.055        
cufflinks 0.189       Low
cufflinks 0.759        
cufflinks 0.464        

0 Strain