Gene : Glyma.10G117100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11404:SF24 - SUPEROXIDE DISMUTASE [FE] 2, CHLOROPLASTIC Genomic Order:  1171
Name:  ? Glyma.10G117100 Secondary Identifier:  ? PAC:30475062
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax DETOX1-PWY Glycine max pathologic  
Gmax DETOX1-PWY-1 Glycine max pathologic  
Gmax PWY-6854 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G117100 0.5kb upstream 0.5kb upstream 11475 true Chr10: 29462987-29474461 Glycine max
Glyma.10G117100 0.5kb upstream 0.5kb upstream 500 false Chr10: 29473962-29474461 Glycine max
Glyma.10G117100 0.5kb downstream 0.5kb downstream 11475 true Chr10: 29462487-29473961 Glycine max
Glyma.10G117100 0.5kb downstream 0.5kb downstream 500 false Chr10: 29462487-29462986 Glycine max
Glyma.10G117100 1.0kb upstream 1.0kb upstream 11975 true Chr10: 29462987-29474961 Glycine max
Glyma.10G117100 1.0kb upstream 1.0kb upstream 1000 false Chr10: 29473962-29474961 Glycine max
Glyma.10G117100 1.0kb downstream 1.0kb downstream 11975 true Chr10: 29461987-29473961 Glycine max
Glyma.10G117100 1.0kb downstream 1.0kb downstream 1000 false Chr10: 29461987-29462986 Glycine max
Glyma.10G117100 2.0kb upstream 2.0kb upstream 12975 true Chr10: 29462987-29475961 Glycine max
Glyma.10G117100 2.0kb upstream 2.0kb upstream 2000 false Chr10: 29473962-29475961 Glycine max
Glyma.10G117100 2.0kb downstream 2.0kb downstream 12975 true Chr10: 29460987-29473961 Glycine max
Glyma.10G117100 2.0kb downstream 2.0kb downstream 2000 false Chr10: 29460987-29462986 Glycine max
Glyma.10G117100 5.0kb upstream 5.0kb upstream 15975 true Chr10: 29462987-29478961 Glycine max
Glyma.10G117100 5.0kb upstream 5.0kb upstream 5000 false Chr10: 29473962-29478961 Glycine max
Glyma.10G117100 5.0kb downstream 5.0kb downstream 15975 true Chr10: 29457987-29473961 Glycine max
Glyma.10G117100 5.0kb downstream 5.0kb downstream 5000 false Chr10: 29457987-29462986 Glycine max
Glyma.10G117100 10.0kb upstream 10.0kb upstream 20975 true Chr10: 29462987-29483961 Glycine max
Glyma.10G117100 10.0kb upstream 10.0kb upstream 10000 false Chr10: 29473962-29483961 Glycine max
Glyma.10G117100 10.0kb downstream 10.0kb downstream 20975 true Chr10: 29452987-29473961 Glycine max
Glyma.10G117100 10.0kb downstream 10.0kb downstream 10000 false Chr10: 29452987-29462986 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308023 5265 Fabidae View MSA
124072391 5270 Rosid View MSA
123741409 5271 Pentapetalae View MSA
122787652 5272 Eudicot View MSA
122047747 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.19677 0.0 16.514   High
cufflinks 3.84004 0.0 15.5706   High
cufflinks 1.97494 0.0 9.67895    
cufflinks 2.37913 0.0 11.369    
cufflinks 1.31121 0.0 5.66749    
cufflinks 0.757516 0.0 4.55539   Low
cufflinks 2.36651 0.0 11.4664    
cufflinks 2.80774 0.0 12.5697    
cufflinks 1.5952 0.0 8.37282    
cufflinks 0.201        
cufflinks 0.017     Low Low
cufflinks 0.252        
cufflinks 0.086     Low  
cufflinks 0.109        
cufflinks 0.03     Low Low
cufflinks 0.423       High
cufflinks 0.095        
cufflinks 0.257        
cufflinks 0.382        
cufflinks 0.27        
cufflinks 0.032     Low Low
cufflinks 0.349        
cufflinks 0.552       High
cufflinks 0.022     Low Low
cufflinks 0.358        
cufflinks 0.04     Low  

0 Strain