Gene : Glyma.10G089300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR34940:SF1 - PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC Genomic Order:  893
Name:  ? Glyma.10G089300 Secondary Identifier:  ? PAC:30475600
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G089300 0.5kb upstream 0.5kb upstream 1075 true Chr10: 11919866-11920940 Glycine max
Glyma.10G089300 0.5kb upstream 0.5kb upstream 500 false Chr10: 11919866-11920365 Glycine max
Glyma.10G089300 0.5kb downstream 0.5kb downstream 1075 true Chr10: 11920366-11921440 Glycine max
Glyma.10G089300 0.5kb downstream 0.5kb downstream 500 false Chr10: 11920941-11921440 Glycine max
Glyma.10G089300 1.0kb upstream 1.0kb upstream 1575 true Chr10: 11919366-11920940 Glycine max
Glyma.10G089300 1.0kb upstream 1.0kb upstream 1000 false Chr10: 11919366-11920365 Glycine max
Glyma.10G089300 1.0kb downstream 1.0kb downstream 1575 true Chr10: 11920366-11921940 Glycine max
Glyma.10G089300 1.0kb downstream 1.0kb downstream 1000 false Chr10: 11920941-11921940 Glycine max
Glyma.10G089300 2.0kb upstream 2.0kb upstream 2575 true Chr10: 11918366-11920940 Glycine max
Glyma.10G089300 2.0kb upstream 2.0kb upstream 2000 false Chr10: 11918366-11920365 Glycine max
Glyma.10G089300 2.0kb downstream 2.0kb downstream 2575 true Chr10: 11920366-11922940 Glycine max
Glyma.10G089300 2.0kb downstream 2.0kb downstream 2000 false Chr10: 11920941-11922940 Glycine max
Glyma.10G089300 5.0kb upstream 5.0kb upstream 5575 true Chr10: 11915366-11920940 Glycine max
Glyma.10G089300 5.0kb upstream 5.0kb upstream 5000 false Chr10: 11915366-11920365 Glycine max
Glyma.10G089300 5.0kb downstream 5.0kb downstream 5575 true Chr10: 11920366-11925940 Glycine max
Glyma.10G089300 5.0kb downstream 5.0kb downstream 5000 false Chr10: 11920941-11925940 Glycine max
Glyma.10G089300 10.0kb upstream 10.0kb upstream 10575 true Chr10: 11910366-11920940 Glycine max
Glyma.10G089300 10.0kb upstream 10.0kb upstream 10000 false Chr10: 11910366-11920365 Glycine max
Glyma.10G089300 10.0kb downstream 10.0kb downstream 10575 true Chr10: 11920366-11930940 Glycine max
Glyma.10G089300 10.0kb downstream 10.0kb downstream 10000 false Chr10: 11920941-11930940 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305386 5265 Fabidae View MSA
124063108 5270 Rosid View MSA
123738637 5271 Pentapetalae View MSA
122793683 5272 Eudicot View MSA
122046745 5273 Angiosperm View MSA
121349271 5274 Embryophyte View MSA
123427633 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.3733 0.0 86.2534 High  
cufflinks 67.5476 0.0 180.21 High  
cufflinks 16.5424 0.0 48.805    
cufflinks 41.2674 0.0 111.398 High  
cufflinks 6.3363 0.0 21.1649    
cufflinks 5.00237 0.0 17.2344   Low
cufflinks 116.676 0.0 316.807 High High
cufflinks 50.5793 0.0 135.447 High  
cufflinks 3.74899 0.0 13.2507   Low
cufflinks 45.511     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 27.344     High  
cufflinks 0.086     Low Low
cufflinks 0.032     Low Low
cufflinks 0.031     Low Low
cufflinks 191.587     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 30.705     High  
cufflinks 40.617     High  
cufflinks 274.57     High  
cufflinks 0.086       Low
cufflinks 251.371     High  
cufflinks 162.101     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 273.65     High  
cufflinks 0.05     Low Low

0 Strain