Gene : Glyma.10G089500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR34940:SF1 - PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTIC Genomic Order:  895
Name:  ? Glyma.10G089500 Secondary Identifier:  ? PAC:30474467
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G089500 0.5kb upstream 0.5kb upstream 1603 true Chr10: 11937516-11939118 Glycine max
Glyma.10G089500 0.5kb upstream 0.5kb upstream 500 false Chr10: 11938619-11939118 Glycine max
Glyma.10G089500 0.5kb downstream 0.5kb downstream 1603 true Chr10: 11937016-11938618 Glycine max
Glyma.10G089500 0.5kb downstream 0.5kb downstream 500 false Chr10: 11937016-11937515 Glycine max
Glyma.10G089500 1.0kb upstream 1.0kb upstream 2103 true Chr10: 11937516-11939618 Glycine max
Glyma.10G089500 1.0kb upstream 1.0kb upstream 1000 false Chr10: 11938619-11939618 Glycine max
Glyma.10G089500 1.0kb downstream 1.0kb downstream 2103 true Chr10: 11936516-11938618 Glycine max
Glyma.10G089500 1.0kb downstream 1.0kb downstream 1000 false Chr10: 11936516-11937515 Glycine max
Glyma.10G089500 2.0kb upstream 2.0kb upstream 3103 true Chr10: 11937516-11940618 Glycine max
Glyma.10G089500 2.0kb upstream 2.0kb upstream 2000 false Chr10: 11938619-11940618 Glycine max
Glyma.10G089500 2.0kb downstream 2.0kb downstream 3103 true Chr10: 11935516-11938618 Glycine max
Glyma.10G089500 2.0kb downstream 2.0kb downstream 2000 false Chr10: 11935516-11937515 Glycine max
Glyma.10G089500 5.0kb upstream 5.0kb upstream 6103 true Chr10: 11937516-11943618 Glycine max
Glyma.10G089500 5.0kb upstream 5.0kb upstream 5000 false Chr10: 11938619-11943618 Glycine max
Glyma.10G089500 5.0kb downstream 5.0kb downstream 6103 true Chr10: 11932516-11938618 Glycine max
Glyma.10G089500 5.0kb downstream 5.0kb downstream 5000 false Chr10: 11932516-11937515 Glycine max
Glyma.10G089500 10.0kb upstream 10.0kb upstream 11103 true Chr10: 11937516-11948618 Glycine max
Glyma.10G089500 10.0kb upstream 10.0kb upstream 10000 false Chr10: 11938619-11948618 Glycine max
Glyma.10G089500 10.0kb downstream 10.0kb downstream 11103 true Chr10: 11927516-11938618 Glycine max
Glyma.10G089500 10.0kb downstream 10.0kb downstream 10000 false Chr10: 11927516-11937515 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305386 5265 Fabidae View MSA
124063108 5270 Rosid View MSA
123738637 5271 Pentapetalae View MSA
122793683 5272 Eudicot View MSA
122046745 5273 Angiosperm View MSA
121349271 5274 Embryophyte View MSA
123427633 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.9697 0.0 114.665 High High
cufflinks 57.5333 0.0 154.548 High High
cufflinks 10.9997 0.0 31.819    
cufflinks 25.6395 0.0 69.0366 High  
cufflinks 4.38144 0.0 14.416   Low
cufflinks 3.99844 0.0 13.3219   Low
cufflinks 20.7285 0.0 56.5245    
cufflinks 16.5865 0.0 45.9743    
cufflinks 2.71017 0.0 9.42169   Low
cufflinks 31.378     High  
cufflinks 0.115       Low
cufflinks 28.593     High  
cufflinks 0.634        
cufflinks 0.374        
cufflinks 0.154       Low
cufflinks 177.198     High High
cufflinks 0.172       Low
cufflinks 41.32     High  
cufflinks 45.579     High  
cufflinks 242.777     High High
cufflinks 0.168       Low
cufflinks 194.696     High High
cufflinks 119.019     High  
cufflinks 0.282        
cufflinks 258.349     High High
cufflinks 0.387        

0 Strain