Gene : Glyma.10G089600 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11082:SF29 - TRNA-DIHYDROURIDINE SYNTHASE Genomic Order:  896
Name:  ? Glyma.10G089600 Secondary Identifier:  ? PAC:30473728
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G089600 0.5kb upstream 0.5kb upstream 16384 true Chr10: 11938619-11955002 Glycine max
Glyma.10G089600 0.5kb upstream 0.5kb upstream 500 false Chr10: 11954503-11955002 Glycine max
Glyma.10G089600 0.5kb downstream 0.5kb downstream 16384 true Chr10: 11938119-11954502 Glycine max
Glyma.10G089600 0.5kb downstream 0.5kb downstream 500 false Chr10: 11938119-11938618 Glycine max
Glyma.10G089600 1.0kb upstream 1.0kb upstream 16884 true Chr10: 11938619-11955502 Glycine max
Glyma.10G089600 1.0kb upstream 1.0kb upstream 1000 false Chr10: 11954503-11955502 Glycine max
Glyma.10G089600 1.0kb downstream 1.0kb downstream 16884 true Chr10: 11937619-11954502 Glycine max
Glyma.10G089600 1.0kb downstream 1.0kb downstream 1000 false Chr10: 11937619-11938618 Glycine max
Glyma.10G089600 2.0kb upstream 2.0kb upstream 17884 true Chr10: 11938619-11956502 Glycine max
Glyma.10G089600 2.0kb upstream 2.0kb upstream 2000 false Chr10: 11954503-11956502 Glycine max
Glyma.10G089600 2.0kb downstream 2.0kb downstream 17884 true Chr10: 11936619-11954502 Glycine max
Glyma.10G089600 2.0kb downstream 2.0kb downstream 2000 false Chr10: 11936619-11938618 Glycine max
Glyma.10G089600 5.0kb upstream 5.0kb upstream 20884 true Chr10: 11938619-11959502 Glycine max
Glyma.10G089600 5.0kb upstream 5.0kb upstream 5000 false Chr10: 11954503-11959502 Glycine max
Glyma.10G089600 5.0kb downstream 5.0kb downstream 20884 true Chr10: 11933619-11954502 Glycine max
Glyma.10G089600 5.0kb downstream 5.0kb downstream 5000 false Chr10: 11933619-11938618 Glycine max
Glyma.10G089600 10.0kb upstream 10.0kb upstream 25884 true Chr10: 11938619-11964502 Glycine max
Glyma.10G089600 10.0kb upstream 10.0kb upstream 10000 false Chr10: 11954503-11964502 Glycine max
Glyma.10G089600 10.0kb downstream 10.0kb downstream 25884 true Chr10: 11928619-11954502 Glycine max
Glyma.10G089600 10.0kb downstream 10.0kb downstream 10000 false Chr10: 11928619-11938618 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313193 5265 Fabidae View MSA
124063739 5270 Rosid View MSA
123742826 5271 Pentapetalae View MSA
122786306 5272 Eudicot View MSA
122042083 5273 Angiosperm View MSA
121347615 5274 Embryophyte View MSA
123428841 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.25808 0.0 23.2373    
cufflinks 6.04418 0.0 25.2608   High
cufflinks 5.65178 0.0 24.2986    
cufflinks 4.68257 0.0 20.8795    
cufflinks 5.68695 0.0 23.8417    
cufflinks 4.08696 0.0 20.0113   Low
cufflinks 3.4398 0.0 17.3584   Low
cufflinks 5.09156 0.0 22.8855    
cufflinks 5.05423 0.0 22.5573    
cufflinks 0.152        
cufflinks 0.075       Low
cufflinks 0.26       High
cufflinks 0.187        
cufflinks 0.189        
cufflinks 0.079       Low
cufflinks 0.171        
cufflinks 0.105        
cufflinks 0.35       High
cufflinks 0.202        
cufflinks 0.205        
cufflinks 0.089       Low
cufflinks 0.187        
cufflinks 0.163        
cufflinks 0.09       Low
cufflinks 0.185        
cufflinks 0.12        

0 Strain