Gene : Glyma.10G148000 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1480
Name:  ? Glyma.10G148000 Secondary Identifier:  ? PAC:30476461
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G148000 0.5kb upstream 0.5kb upstream 1952 true Chr10: 38329927-38331878 Glycine max
Glyma.10G148000 0.5kb upstream 0.5kb upstream 500 false Chr10: 38331379-38331878 Glycine max
Glyma.10G148000 0.5kb downstream 0.5kb downstream 1952 true Chr10: 38329427-38331378 Glycine max
Glyma.10G148000 0.5kb downstream 0.5kb downstream 500 false Chr10: 38329427-38329926 Glycine max
Glyma.10G148000 1.0kb upstream 1.0kb upstream 2452 true Chr10: 38329927-38332378 Glycine max
Glyma.10G148000 1.0kb upstream 1.0kb upstream 1000 false Chr10: 38331379-38332378 Glycine max
Glyma.10G148000 1.0kb downstream 1.0kb downstream 2452 true Chr10: 38328927-38331378 Glycine max
Glyma.10G148000 1.0kb downstream 1.0kb downstream 1000 false Chr10: 38328927-38329926 Glycine max
Glyma.10G148000 2.0kb upstream 2.0kb upstream 3452 true Chr10: 38329927-38333378 Glycine max
Glyma.10G148000 2.0kb upstream 2.0kb upstream 2000 false Chr10: 38331379-38333378 Glycine max
Glyma.10G148000 2.0kb downstream 2.0kb downstream 3452 true Chr10: 38327927-38331378 Glycine max
Glyma.10G148000 2.0kb downstream 2.0kb downstream 2000 false Chr10: 38327927-38329926 Glycine max
Glyma.10G148000 5.0kb upstream 5.0kb upstream 6452 true Chr10: 38329927-38336378 Glycine max
Glyma.10G148000 5.0kb upstream 5.0kb upstream 5000 false Chr10: 38331379-38336378 Glycine max
Glyma.10G148000 5.0kb downstream 5.0kb downstream 6452 true Chr10: 38324927-38331378 Glycine max
Glyma.10G148000 5.0kb downstream 5.0kb downstream 5000 false Chr10: 38324927-38329926 Glycine max
Glyma.10G148000 10.0kb upstream 10.0kb upstream 11452 true Chr10: 38329927-38341378 Glycine max
Glyma.10G148000 10.0kb upstream 10.0kb upstream 10000 false Chr10: 38331379-38341378 Glycine max
Glyma.10G148000 10.0kb downstream 10.0kb downstream 11452 true Chr10: 38319927-38331378 Glycine max
Glyma.10G148000 10.0kb downstream 10.0kb downstream 10000 false Chr10: 38319927-38329926 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304577 5265 Fabidae View MSA
124072342 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.68524 0.0 8.79217   High
cufflinks 0.748735 0.0 2.75008    
cufflinks 0.237722 0.0 0.922353   Low
cufflinks 1.02643 0.0 3.69894    
cufflinks 1.25106 0.0 4.42387    
cufflinks 0.442935 0.0 1.66681    
cufflinks 1.43302 0.0 5.01382    
cufflinks 0.778294 0.0 2.85191    
cufflinks 0.888846 0.0 3.22617    
cufflinks 0.52       Low
cufflinks 1.105        
cufflinks 1.301       High
cufflinks 0.824        
cufflinks 1.719       High
cufflinks 0.636        
cufflinks 0.671        
cufflinks 1.984       High
cufflinks 0.779        
cufflinks 1.002        
cufflinks 0.548       Low
cufflinks 0.598        
cufflinks 0.92        
cufflinks 0.979        
cufflinks 0.907        
cufflinks 0.609        
cufflinks 0.793        

0 Strain