Gene : Glyma.10G132800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23083//PTHR23083:SF380 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Genomic Order:  1328
Name:  ? Glyma.10G132800 Secondary Identifier:  ? PAC:30473824
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G132800 0.5kb upstream 0.5kb upstream 4239 true Chr10: 35744023-35748261 Glycine max
Glyma.10G132800 0.5kb upstream 0.5kb upstream 500 false Chr10: 35747762-35748261 Glycine max
Glyma.10G132800 0.5kb downstream 0.5kb downstream 4239 true Chr10: 35743523-35747761 Glycine max
Glyma.10G132800 0.5kb downstream 0.5kb downstream 500 false Chr10: 35743523-35744022 Glycine max
Glyma.10G132800 1.0kb upstream 1.0kb upstream 4739 true Chr10: 35744023-35748761 Glycine max
Glyma.10G132800 1.0kb upstream 1.0kb upstream 1000 false Chr10: 35747762-35748761 Glycine max
Glyma.10G132800 1.0kb downstream 1.0kb downstream 4739 true Chr10: 35743023-35747761 Glycine max
Glyma.10G132800 1.0kb downstream 1.0kb downstream 1000 false Chr10: 35743023-35744022 Glycine max
Glyma.10G132800 2.0kb upstream 2.0kb upstream 5739 true Chr10: 35744023-35749761 Glycine max
Glyma.10G132800 2.0kb upstream 2.0kb upstream 2000 false Chr10: 35747762-35749761 Glycine max
Glyma.10G132800 2.0kb downstream 2.0kb downstream 5739 true Chr10: 35742023-35747761 Glycine max
Glyma.10G132800 2.0kb downstream 2.0kb downstream 2000 false Chr10: 35742023-35744022 Glycine max
Glyma.10G132800 5.0kb upstream 5.0kb upstream 8739 true Chr10: 35744023-35752761 Glycine max
Glyma.10G132800 5.0kb upstream 5.0kb upstream 5000 false Chr10: 35747762-35752761 Glycine max
Glyma.10G132800 5.0kb downstream 5.0kb downstream 8739 true Chr10: 35739023-35747761 Glycine max
Glyma.10G132800 5.0kb downstream 5.0kb downstream 5000 false Chr10: 35739023-35744022 Glycine max
Glyma.10G132800 10.0kb upstream 10.0kb upstream 13739 true Chr10: 35744023-35757761 Glycine max
Glyma.10G132800 10.0kb upstream 10.0kb upstream 10000 false Chr10: 35747762-35757761 Glycine max
Glyma.10G132800 10.0kb downstream 10.0kb downstream 13739 true Chr10: 35734023-35747761 Glycine max
Glyma.10G132800 10.0kb downstream 10.0kb downstream 10000 false Chr10: 35734023-35744022 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303934 5265 Fabidae View MSA
124068399 5270 Rosid View MSA
123739608 5271 Pentapetalae View MSA
122792397 5272 Eudicot View MSA
122043324 5273 Angiosperm View MSA
121346107 5274 Embryophyte View MSA
123380332 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.54776 0.0 12.3237    
cufflinks 5.32922 0.0 14.3472    
cufflinks 2.99834 0.0 8.4046   Low
cufflinks 6.19665 0.0 16.589    
cufflinks 5.3451 0.0 14.3665    
cufflinks 5.22098 0.0 14.047    
cufflinks 6.09882 0.0 16.3273    
cufflinks 7.23582 0.0 19.3183   High
cufflinks 4.3228 0.0 11.7534    
cufflinks 5.798       High
cufflinks 3.197        
cufflinks 4.597        
cufflinks 5.277        
cufflinks 4.889        
cufflinks 2.554       Low
cufflinks 4.461        
cufflinks 4.42        
cufflinks 4.54        
cufflinks 6.709       High
cufflinks 4.279        
cufflinks 2.148       Low
cufflinks 5.237        
cufflinks 5.54        
cufflinks 3.196        
cufflinks 4.359        
cufflinks 2.754       Low

0 Strain