Gene : Glyma.10G196300 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR11638//PTHR11638:SF106 - ATP-DEPENDENT CLP PROTEASE Genomic Order:  1963
Name:  ? Glyma.10G196300 Secondary Identifier:  ? PAC:30477240
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G196300 0.5kb upstream 0.5kb upstream 3976 true Chr10: 42778690-42782665 Glycine max
Glyma.10G196300 0.5kb upstream 0.5kb upstream 500 false Chr10: 42782166-42782665 Glycine max
Glyma.10G196300 0.5kb downstream 0.5kb downstream 3976 true Chr10: 42778190-42782165 Glycine max
Glyma.10G196300 0.5kb downstream 0.5kb downstream 500 false Chr10: 42778190-42778689 Glycine max
Glyma.10G196300 1.0kb upstream 1.0kb upstream 4476 true Chr10: 42778690-42783165 Glycine max
Glyma.10G196300 1.0kb upstream 1.0kb upstream 1000 false Chr10: 42782166-42783165 Glycine max
Glyma.10G196300 1.0kb downstream 1.0kb downstream 4476 true Chr10: 42777690-42782165 Glycine max
Glyma.10G196300 1.0kb downstream 1.0kb downstream 1000 false Chr10: 42777690-42778689 Glycine max
Glyma.10G196300 2.0kb upstream 2.0kb upstream 5476 true Chr10: 42778690-42784165 Glycine max
Glyma.10G196300 2.0kb upstream 2.0kb upstream 2000 false Chr10: 42782166-42784165 Glycine max
Glyma.10G196300 2.0kb downstream 2.0kb downstream 5476 true Chr10: 42776690-42782165 Glycine max
Glyma.10G196300 2.0kb downstream 2.0kb downstream 2000 false Chr10: 42776690-42778689 Glycine max
Glyma.10G196300 5.0kb upstream 5.0kb upstream 8476 true Chr10: 42778690-42787165 Glycine max
Glyma.10G196300 5.0kb upstream 5.0kb upstream 5000 false Chr10: 42782166-42787165 Glycine max
Glyma.10G196300 5.0kb downstream 5.0kb downstream 8476 true Chr10: 42773690-42782165 Glycine max
Glyma.10G196300 5.0kb downstream 5.0kb downstream 5000 false Chr10: 42773690-42778689 Glycine max
Glyma.10G196300 10.0kb upstream 10.0kb upstream 13476 true Chr10: 42778690-42792165 Glycine max
Glyma.10G196300 10.0kb upstream 10.0kb upstream 10000 false Chr10: 42782166-42792165 Glycine max
Glyma.10G196300 10.0kb downstream 10.0kb downstream 13476 true Chr10: 42768690-42782165 Glycine max
Glyma.10G196300 10.0kb downstream 10.0kb downstream 10000 false Chr10: 42768690-42778689 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309511 5265 Fabidae View MSA
124070007 5270 Rosid View MSA
123743418 5271 Pentapetalae View MSA
122787302 5272 Eudicot View MSA
122049419 5273 Angiosperm View MSA
121351273 5274 Embryophyte View MSA
123382090 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.797471 0.0 2.71713    
cufflinks 4.75741 0.0 12.9865   High
cufflinks 0.820304 0.0 2.76795    
cufflinks 1.5044 0.0 4.69087    
cufflinks 1.22001 0.0 3.94554    
cufflinks 0.627552 0.0 2.18769   Low
cufflinks 1.04362 0.0 3.44696    
cufflinks 1.75473 0.0 5.34751    
cufflinks 1.52344 0.0 4.75181    
cufflinks 2.496        
cufflinks 0.987        
cufflinks 2.15        
cufflinks 1.998        
cufflinks 1.133        
cufflinks 0.429       Low
cufflinks 3.967        
cufflinks 0.371       Low
cufflinks 3.464        
cufflinks 3.649        
cufflinks 3.828        
cufflinks 2.255        
cufflinks 4.1        
cufflinks 3.708        
cufflinks 0.676       Low
cufflinks 3.112        
cufflinks 1.664        

0 Strain