Gene : Glyma.10G196400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR34373:SF2 - SHUGOSHIN C TERMINUS Genomic Order:  1964
Name:  ? Glyma.10G196400 Secondary Identifier:  ? PAC:30476102
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G196400 0.5kb upstream 0.5kb upstream 3364 true Chr10: 42787540-42790903 Glycine max
Glyma.10G196400 0.5kb upstream 0.5kb upstream 500 false Chr10: 42787540-42788039 Glycine max
Glyma.10G196400 0.5kb downstream 0.5kb downstream 3364 true Chr10: 42788040-42791403 Glycine max
Glyma.10G196400 0.5kb downstream 0.5kb downstream 500 false Chr10: 42790904-42791403 Glycine max
Glyma.10G196400 1.0kb upstream 1.0kb upstream 3864 true Chr10: 42787040-42790903 Glycine max
Glyma.10G196400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 42787040-42788039 Glycine max
Glyma.10G196400 1.0kb downstream 1.0kb downstream 3864 true Chr10: 42788040-42791903 Glycine max
Glyma.10G196400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 42790904-42791903 Glycine max
Glyma.10G196400 2.0kb upstream 2.0kb upstream 4864 true Chr10: 42786040-42790903 Glycine max
Glyma.10G196400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 42786040-42788039 Glycine max
Glyma.10G196400 2.0kb downstream 2.0kb downstream 4864 true Chr10: 42788040-42792903 Glycine max
Glyma.10G196400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 42790904-42792903 Glycine max
Glyma.10G196400 5.0kb upstream 5.0kb upstream 7864 true Chr10: 42783040-42790903 Glycine max
Glyma.10G196400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 42783040-42788039 Glycine max
Glyma.10G196400 5.0kb downstream 5.0kb downstream 7864 true Chr10: 42788040-42795903 Glycine max
Glyma.10G196400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 42790904-42795903 Glycine max
Glyma.10G196400 10.0kb upstream 10.0kb upstream 12864 true Chr10: 42778040-42790903 Glycine max
Glyma.10G196400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 42778040-42788039 Glycine max
Glyma.10G196400 10.0kb downstream 10.0kb downstream 12864 true Chr10: 42788040-42800903 Glycine max
Glyma.10G196400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 42790904-42800903 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028020 5273 Angiosperm View MSA
122306201 5265 Fabidae View MSA
124074097 5270 Rosid View MSA
123746067 5271 Pentapetalae View MSA
122795330 5272 Eudicot View MSA
121349389 5274 Embryophyte View MSA
123381292 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.406363 0.0 2.65586   Low
cufflinks 7.67207 0.0 27.9976   High
cufflinks 1.13674 0.0 6.06137    
cufflinks 2.27489 0.0 10.038    
cufflinks 3.07401 0.0 12.4694    
cufflinks 2.89066 0.0 11.912    
cufflinks 3.09608 0.0 12.5281    
cufflinks 2.21375 0.0 9.84464    
cufflinks 3.42375 0.0 13.326    
cufflinks 1.282        
cufflinks 0.482       Low
cufflinks 1.256        
cufflinks 2.319        
cufflinks 2.445        
cufflinks 0.396       Low
cufflinks 3.718       High
cufflinks 0.527       Low
cufflinks 1.061        
cufflinks 3.576       High
cufflinks 3.014        
cufflinks 0.66        
cufflinks 3.475       High
cufflinks 4.852       High
cufflinks 0.614       Low
cufflinks 3.425        
cufflinks 0.885        

0 Strain