Gene : Glyma.10G189500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR24012:SF308 - PROTEIN Y55F3AM.3, ISOFORM A Genomic Order:  1895
Name:  ? Glyma.10G189500 Secondary Identifier:  ? PAC:30475023
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G189500 0.5kb upstream 0.5kb upstream 4244 true Chr10: 42267022-42271265 Glycine max
Glyma.10G189500 0.5kb upstream 0.5kb upstream 500 false Chr10: 42270766-42271265 Glycine max
Glyma.10G189500 0.5kb downstream 0.5kb downstream 4244 true Chr10: 42266522-42270765 Glycine max
Glyma.10G189500 0.5kb downstream 0.5kb downstream 500 false Chr10: 42266522-42267021 Glycine max
Glyma.10G189500 1.0kb upstream 1.0kb upstream 4744 true Chr10: 42267022-42271765 Glycine max
Glyma.10G189500 1.0kb upstream 1.0kb upstream 1000 false Chr10: 42270766-42271765 Glycine max
Glyma.10G189500 1.0kb downstream 1.0kb downstream 4744 true Chr10: 42266022-42270765 Glycine max
Glyma.10G189500 1.0kb downstream 1.0kb downstream 1000 false Chr10: 42266022-42267021 Glycine max
Glyma.10G189500 2.0kb upstream 2.0kb upstream 5744 true Chr10: 42267022-42272765 Glycine max
Glyma.10G189500 2.0kb upstream 2.0kb upstream 2000 false Chr10: 42270766-42272765 Glycine max
Glyma.10G189500 2.0kb downstream 2.0kb downstream 5744 true Chr10: 42265022-42270765 Glycine max
Glyma.10G189500 2.0kb downstream 2.0kb downstream 2000 false Chr10: 42265022-42267021 Glycine max
Glyma.10G189500 5.0kb upstream 5.0kb upstream 8744 true Chr10: 42267022-42275765 Glycine max
Glyma.10G189500 5.0kb upstream 5.0kb upstream 5000 false Chr10: 42270766-42275765 Glycine max
Glyma.10G189500 5.0kb downstream 5.0kb downstream 8744 true Chr10: 42262022-42270765 Glycine max
Glyma.10G189500 5.0kb downstream 5.0kb downstream 5000 false Chr10: 42262022-42267021 Glycine max
Glyma.10G189500 10.0kb upstream 10.0kb upstream 13744 true Chr10: 42267022-42280765 Glycine max
Glyma.10G189500 10.0kb upstream 10.0kb upstream 10000 false Chr10: 42270766-42280765 Glycine max
Glyma.10G189500 10.0kb downstream 10.0kb downstream 13744 true Chr10: 42257022-42270765 Glycine max
Glyma.10G189500 10.0kb downstream 10.0kb downstream 10000 false Chr10: 42257022-42267021 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122244746 5265 Fabidae Singleton cluster - no MSA
124062426 5270 Rosid View MSA
123739967 5271 Pentapetalae View MSA
122796088 5272 Eudicot View MSA
122043625 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349165 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.0402 0.0 114.764 High  
cufflinks 28.3305 0.0 108.369 High  
cufflinks 32.0149 0.0 125.452 High  
cufflinks 25.3556 0.0 92.4922 High  
cufflinks 37.176 0.0 148.694 High  
cufflinks 22.8477 0.0 83.2193   Low
cufflinks 50.1646 0.0 219.728 High High
cufflinks 27.5278 0.0 101.984 High  
cufflinks 25.6727 0.0 94.6676 High  
cufflinks 6.023       Low
cufflinks 7.251     High  
cufflinks 6.628        
cufflinks 8.231     High  
cufflinks 9.723     High High
cufflinks 7.531     High  
cufflinks 9.223     High  
cufflinks 6.218     High Low
cufflinks 6.596       Low
cufflinks 10.232     High High
cufflinks 9.119     High  
cufflinks 7.279     High  
cufflinks 9.017     High  
cufflinks 9.062     High  
cufflinks 7.133     High  
cufflinks 8.893     High  
cufflinks 6.586     High Low

0 Strain