Gene : Glyma.10G190600 G. max Wm82.a2.v1
Defline:  (1 of 113) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1906
Name:  ? Glyma.10G190600 Secondary Identifier:  ? PAC:30476601
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G190600 0.5kb upstream 0.5kb upstream 4105 true Chr10: 42336298-42340402 Glycine max
Glyma.10G190600 0.5kb upstream 0.5kb upstream 500 false Chr10: 42339903-42340402 Glycine max
Glyma.10G190600 0.5kb downstream 0.5kb downstream 4105 true Chr10: 42335798-42339902 Glycine max
Glyma.10G190600 0.5kb downstream 0.5kb downstream 500 false Chr10: 42335798-42336297 Glycine max
Glyma.10G190600 1.0kb upstream 1.0kb upstream 4605 true Chr10: 42336298-42340902 Glycine max
Glyma.10G190600 1.0kb upstream 1.0kb upstream 1000 false Chr10: 42339903-42340902 Glycine max
Glyma.10G190600 1.0kb downstream 1.0kb downstream 4605 true Chr10: 42335298-42339902 Glycine max
Glyma.10G190600 1.0kb downstream 1.0kb downstream 1000 false Chr10: 42335298-42336297 Glycine max
Glyma.10G190600 2.0kb upstream 2.0kb upstream 5605 true Chr10: 42336298-42341902 Glycine max
Glyma.10G190600 2.0kb upstream 2.0kb upstream 2000 false Chr10: 42339903-42341902 Glycine max
Glyma.10G190600 2.0kb downstream 2.0kb downstream 5605 true Chr10: 42334298-42339902 Glycine max
Glyma.10G190600 2.0kb downstream 2.0kb downstream 2000 false Chr10: 42334298-42336297 Glycine max
Glyma.10G190600 5.0kb upstream 5.0kb upstream 8605 true Chr10: 42336298-42344902 Glycine max
Glyma.10G190600 5.0kb upstream 5.0kb upstream 5000 false Chr10: 42339903-42344902 Glycine max
Glyma.10G190600 5.0kb downstream 5.0kb downstream 8605 true Chr10: 42331298-42339902 Glycine max
Glyma.10G190600 5.0kb downstream 5.0kb downstream 5000 false Chr10: 42331298-42336297 Glycine max
Glyma.10G190600 10.0kb upstream 10.0kb upstream 13605 true Chr10: 42336298-42349902 Glycine max
Glyma.10G190600 10.0kb upstream 10.0kb upstream 10000 false Chr10: 42339903-42349902 Glycine max
Glyma.10G190600 10.0kb downstream 10.0kb downstream 13605 true Chr10: 42326298-42339902 Glycine max
Glyma.10G190600 10.0kb downstream 10.0kb downstream 10000 false Chr10: 42326298-42336297 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026493 5273 Angiosperm View MSA
122300560 5265 Fabidae View MSA
124068457 5270 Rosid View MSA
123738065 5271 Pentapetalae View MSA
122785849 5272 Eudicot View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.31505 0.0 4.21807   High
cufflinks 0.985143 0.0 3.28369    
cufflinks 0.336464 0.0 1.22761   Low
cufflinks 0.697755 0.0 2.41618    
cufflinks 0.686901 0.0 2.38394    
cufflinks 0.24933 0.0 0.925581 Low Low
cufflinks 0.672941 0.0 2.33966    
cufflinks 0.472077 0.0 1.68747    
cufflinks 0.877471 0.0 2.96585    
cufflinks 0.432        
cufflinks 0.323       Low
cufflinks 0.74        
cufflinks 0.668        
cufflinks 0.946       High
cufflinks 0.461        
cufflinks 0.56        
cufflinks 0.447        
cufflinks 0.704        
cufflinks 0.978       High
cufflinks 0.542        
cufflinks 0.353       Low
cufflinks 0.683        
cufflinks 0.736        
cufflinks 0.304       Low
cufflinks 0.639        
cufflinks 0.415        

0 Strain