Gene : Glyma.10G180600 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR11455:SF24 - CRYPTOCHROME-1 Genomic Order:  1806
Name:  ? Glyma.10G180600 Secondary Identifier:  ? PAC:30475338
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G180600 0.5kb upstream 0.5kb upstream 6268 true Chr10: 41416801-41423068 Glycine max
Glyma.10G180600 0.5kb upstream 0.5kb upstream 500 false Chr10: 41422569-41423068 Glycine max
Glyma.10G180600 0.5kb downstream 0.5kb downstream 6268 true Chr10: 41416301-41422568 Glycine max
Glyma.10G180600 0.5kb downstream 0.5kb downstream 500 false Chr10: 41416301-41416800 Glycine max
Glyma.10G180600 1.0kb upstream 1.0kb upstream 6768 true Chr10: 41416801-41423568 Glycine max
Glyma.10G180600 1.0kb upstream 1.0kb upstream 1000 false Chr10: 41422569-41423568 Glycine max
Glyma.10G180600 1.0kb downstream 1.0kb downstream 6768 true Chr10: 41415801-41422568 Glycine max
Glyma.10G180600 1.0kb downstream 1.0kb downstream 1000 false Chr10: 41415801-41416800 Glycine max
Glyma.10G180600 2.0kb upstream 2.0kb upstream 7768 true Chr10: 41416801-41424568 Glycine max
Glyma.10G180600 2.0kb upstream 2.0kb upstream 2000 false Chr10: 41422569-41424568 Glycine max
Glyma.10G180600 2.0kb downstream 2.0kb downstream 7768 true Chr10: 41414801-41422568 Glycine max
Glyma.10G180600 2.0kb downstream 2.0kb downstream 2000 false Chr10: 41414801-41416800 Glycine max
Glyma.10G180600 5.0kb upstream 5.0kb upstream 10768 true Chr10: 41416801-41427568 Glycine max
Glyma.10G180600 5.0kb upstream 5.0kb upstream 5000 false Chr10: 41422569-41427568 Glycine max
Glyma.10G180600 5.0kb downstream 5.0kb downstream 10768 true Chr10: 41411801-41422568 Glycine max
Glyma.10G180600 5.0kb downstream 5.0kb downstream 5000 false Chr10: 41411801-41416800 Glycine max
Glyma.10G180600 10.0kb upstream 10.0kb upstream 15768 true Chr10: 41416801-41432568 Glycine max
Glyma.10G180600 10.0kb upstream 10.0kb upstream 10000 false Chr10: 41422569-41432568 Glycine max
Glyma.10G180600 10.0kb downstream 10.0kb downstream 15768 true Chr10: 41406801-41422568 Glycine max
Glyma.10G180600 10.0kb downstream 10.0kb downstream 10000 false Chr10: 41406801-41416800 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306524 5265 Fabidae View MSA
124066295 5270 Rosid View MSA
123738147 5271 Pentapetalae View MSA
122792892 5272 Eudicot View MSA
122048329 5273 Angiosperm View MSA
121343845 5274 Embryophyte View MSA
123428792 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.6046 0.0 224.911 High  
cufflinks 36.3553 0.0 164.124 High  
cufflinks 78.4109 0.0 514.853 High High
cufflinks 40.6167 0.0 190.803 High  
cufflinks 16.1191 0.0 64.9148   Low
cufflinks 12.7469 0.0 50.5084   Low
cufflinks 45.1141 0.0 217.249 High  
cufflinks 48.9602 0.0 251.435 High  
cufflinks 28.3336 0.0 131.06 High  
cufflinks 7.973     High  
cufflinks 14.321     High  
cufflinks 15.161     High  
cufflinks 2.86       Low
cufflinks 3.056       Low
cufflinks 18.148     High High
cufflinks 13.153     High  
cufflinks 5.52        
cufflinks 12.59     High  
cufflinks 8.358     High  
cufflinks 20.831     High High
cufflinks 9.128     High  
cufflinks 16.225     High  
cufflinks 7.378        
cufflinks 10.036     High  
cufflinks 18.025     High High
cufflinks 7.552     High  

0 Strain