Gene : Glyma.10G175700 G. max Wm82.a2.v1
Defline:  (1 of 1) PF03129//PF13393 - Anticodon binding domain (HGTP_anticodon) // Histidyl-tRNA synthetase (tRNA-synt_His) Genomic Order:  1757
Name:  ? Glyma.10G175700 Secondary Identifier:  ? PAC:30475138
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G175700 0.5kb upstream 0.5kb upstream 2111 true Chr10: 40969927-40972037 Glycine max
Glyma.10G175700 0.5kb upstream 0.5kb upstream 500 false Chr10: 40971538-40972037 Glycine max
Glyma.10G175700 0.5kb downstream 0.5kb downstream 2111 true Chr10: 40969427-40971537 Glycine max
Glyma.10G175700 0.5kb downstream 0.5kb downstream 500 false Chr10: 40969427-40969926 Glycine max
Glyma.10G175700 1.0kb upstream 1.0kb upstream 2611 true Chr10: 40969927-40972537 Glycine max
Glyma.10G175700 1.0kb upstream 1.0kb upstream 1000 false Chr10: 40971538-40972537 Glycine max
Glyma.10G175700 1.0kb downstream 1.0kb downstream 2611 true Chr10: 40968927-40971537 Glycine max
Glyma.10G175700 1.0kb downstream 1.0kb downstream 1000 false Chr10: 40968927-40969926 Glycine max
Glyma.10G175700 2.0kb upstream 2.0kb upstream 3611 true Chr10: 40969927-40973537 Glycine max
Glyma.10G175700 2.0kb upstream 2.0kb upstream 2000 false Chr10: 40971538-40973537 Glycine max
Glyma.10G175700 2.0kb downstream 2.0kb downstream 3611 true Chr10: 40967927-40971537 Glycine max
Glyma.10G175700 2.0kb downstream 2.0kb downstream 2000 false Chr10: 40967927-40969926 Glycine max
Glyma.10G175700 5.0kb upstream 5.0kb upstream 6611 true Chr10: 40969927-40976537 Glycine max
Glyma.10G175700 5.0kb upstream 5.0kb upstream 5000 false Chr10: 40971538-40976537 Glycine max
Glyma.10G175700 5.0kb downstream 5.0kb downstream 6611 true Chr10: 40964927-40971537 Glycine max
Glyma.10G175700 5.0kb downstream 5.0kb downstream 5000 false Chr10: 40964927-40969926 Glycine max
Glyma.10G175700 10.0kb upstream 10.0kb upstream 11611 true Chr10: 40969927-40981537 Glycine max
Glyma.10G175700 10.0kb upstream 10.0kb upstream 10000 false Chr10: 40971538-40981537 Glycine max
Glyma.10G175700 10.0kb downstream 10.0kb downstream 11611 true Chr10: 40959927-40971537 Glycine max
Glyma.10G175700 10.0kb downstream 10.0kb downstream 10000 false Chr10: 40959927-40969926 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779866 5273 Angiosperm View MSA
122244762 5265 Fabidae Singleton cluster - no MSA
124073900 5270 Rosid View MSA
123744374 5271 Pentapetalae View MSA
122771051 5272 Eudicot View MSA
121051502 5274 Embryophyte View MSA
123091588 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain