Gene : Glyma.10G221200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22603:SF39 - CHOLINE KINASE 1-RELATED Genomic Order:  2212
Name:  ? Glyma.10G221200 Secondary Identifier:  ? PAC:30474372
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3385 Glycine max pathologic  
Gmax PWY4FS-6 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G221200 0.5kb upstream 0.5kb upstream 6820 true Chr10: 45255043-45261862 Glycine max
Glyma.10G221200 0.5kb upstream 0.5kb upstream 500 false Chr10: 45261363-45261862 Glycine max
Glyma.10G221200 0.5kb downstream 0.5kb downstream 6820 true Chr10: 45254543-45261362 Glycine max
Glyma.10G221200 0.5kb downstream 0.5kb downstream 500 false Chr10: 45254543-45255042 Glycine max
Glyma.10G221200 1.0kb upstream 1.0kb upstream 7320 true Chr10: 45255043-45262362 Glycine max
Glyma.10G221200 1.0kb upstream 1.0kb upstream 1000 false Chr10: 45261363-45262362 Glycine max
Glyma.10G221200 1.0kb downstream 1.0kb downstream 7320 true Chr10: 45254043-45261362 Glycine max
Glyma.10G221200 1.0kb downstream 1.0kb downstream 1000 false Chr10: 45254043-45255042 Glycine max
Glyma.10G221200 2.0kb upstream 2.0kb upstream 8320 true Chr10: 45255043-45263362 Glycine max
Glyma.10G221200 2.0kb upstream 2.0kb upstream 2000 false Chr10: 45261363-45263362 Glycine max
Glyma.10G221200 2.0kb downstream 2.0kb downstream 8320 true Chr10: 45253043-45261362 Glycine max
Glyma.10G221200 2.0kb downstream 2.0kb downstream 2000 false Chr10: 45253043-45255042 Glycine max
Glyma.10G221200 5.0kb upstream 5.0kb upstream 11320 true Chr10: 45255043-45266362 Glycine max
Glyma.10G221200 5.0kb upstream 5.0kb upstream 5000 false Chr10: 45261363-45266362 Glycine max
Glyma.10G221200 5.0kb downstream 5.0kb downstream 11320 true Chr10: 45250043-45261362 Glycine max
Glyma.10G221200 5.0kb downstream 5.0kb downstream 5000 false Chr10: 45250043-45255042 Glycine max
Glyma.10G221200 10.0kb upstream 10.0kb upstream 16320 true Chr10: 45255043-45271362 Glycine max
Glyma.10G221200 10.0kb upstream 10.0kb upstream 10000 false Chr10: 45261363-45271362 Glycine max
Glyma.10G221200 10.0kb downstream 10.0kb downstream 16320 true Chr10: 45245043-45261362 Glycine max
Glyma.10G221200 10.0kb downstream 10.0kb downstream 10000 false Chr10: 45245043-45255042 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311650 5265 Fabidae View MSA
124069180 5270 Rosid View MSA
123746925 5271 Pentapetalae View MSA
122797485 5272 Eudicot View MSA
122047896 5273 Angiosperm View MSA
121347088 5274 Embryophyte View MSA
123426626 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.19725 0.0 7.88462    
cufflinks 0.886641 0.0 7.0699    
cufflinks 40.8678 0.0 183.582 High High
cufflinks 0.537504 0.0 3.4325    
cufflinks 1.63739 0.0 10.0546    
cufflinks 20.0757 0.0 79.8049   High
cufflinks 0.204243 0.0 1.41748 Low Low
cufflinks 2.1751 0.0 12.0061    
cufflinks 3.10554 0.0 15.3766    
cufflinks 0.161        
cufflinks 0.843        
cufflinks 2.536       High
cufflinks 0.23        
cufflinks 0.023     Low Low
cufflinks 0.097       Low
cufflinks 0.274        
cufflinks 11.863     High High
cufflinks 0.22        
cufflinks 0.169        
cufflinks 0.332        
cufflinks 0.714        
cufflinks 0.217        
cufflinks 0.614        
cufflinks 0.593        
cufflinks 0.369        
cufflinks 3.595       High

0 Strain