Gene : Glyma.10G248900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12725//PTHR12725:SF81 - HALOACID DEHALOGENASE-LIKE HYDROLASE Genomic Order:  2489
Name:  ? Glyma.10G248900 Secondary Identifier:  ? PAC:30478253
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7204 Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G248900 0.5kb upstream 0.5kb upstream 2384 true Chr10: 47714512-47716895 Glycine max
Glyma.10G248900 0.5kb upstream 0.5kb upstream 500 false Chr10: 47714512-47715011 Glycine max
Glyma.10G248900 0.5kb downstream 0.5kb downstream 2384 true Chr10: 47715012-47717395 Glycine max
Glyma.10G248900 0.5kb downstream 0.5kb downstream 500 false Chr10: 47716896-47717395 Glycine max
Glyma.10G248900 1.0kb upstream 1.0kb upstream 2884 true Chr10: 47714012-47716895 Glycine max
Glyma.10G248900 1.0kb upstream 1.0kb upstream 1000 false Chr10: 47714012-47715011 Glycine max
Glyma.10G248900 1.0kb downstream 1.0kb downstream 2884 true Chr10: 47715012-47717895 Glycine max
Glyma.10G248900 1.0kb downstream 1.0kb downstream 1000 false Chr10: 47716896-47717895 Glycine max
Glyma.10G248900 2.0kb upstream 2.0kb upstream 3884 true Chr10: 47713012-47716895 Glycine max
Glyma.10G248900 2.0kb upstream 2.0kb upstream 2000 false Chr10: 47713012-47715011 Glycine max
Glyma.10G248900 2.0kb downstream 2.0kb downstream 3884 true Chr10: 47715012-47718895 Glycine max
Glyma.10G248900 2.0kb downstream 2.0kb downstream 2000 false Chr10: 47716896-47718895 Glycine max
Glyma.10G248900 5.0kb upstream 5.0kb upstream 6884 true Chr10: 47710012-47716895 Glycine max
Glyma.10G248900 5.0kb upstream 5.0kb upstream 5000 false Chr10: 47710012-47715011 Glycine max
Glyma.10G248900 5.0kb downstream 5.0kb downstream 6884 true Chr10: 47715012-47721895 Glycine max
Glyma.10G248900 5.0kb downstream 5.0kb downstream 5000 false Chr10: 47716896-47721895 Glycine max
Glyma.10G248900 10.0kb upstream 10.0kb upstream 11884 true Chr10: 47705012-47716895 Glycine max
Glyma.10G248900 10.0kb upstream 10.0kb upstream 10000 false Chr10: 47705012-47715011 Glycine max
Glyma.10G248900 10.0kb downstream 10.0kb downstream 11884 true Chr10: 47715012-47726895 Glycine max
Glyma.10G248900 10.0kb downstream 10.0kb downstream 10000 false Chr10: 47716896-47726895 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122245712 5265 Fabidae Singleton cluster - no MSA
124062962 5270 Rosid View MSA
123740146 5271 Pentapetalae View MSA
122790968 5272 Eudicot View MSA
122048898 5273 Angiosperm View MSA
121311158 5274 Embryophyte View MSA
123426890 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.16672 0.0 28.1724   Low
cufflinks 10.8857 0.0 32.677   Low
cufflinks 135.438 0.0 378.736 High  
cufflinks 13.2863 0.0 38.8428    
cufflinks 470.704 0.0 1655.82 High High
cufflinks 152.797 0.0 435.47 High  
cufflinks 46.713 0.0 124.659 High  
cufflinks 30.65 0.0 82.8296 High  
cufflinks 646.372 0.0 2460.42 High High
cufflinks 26.22     High Low
cufflinks 640.624     High High
cufflinks 103.818     High  
cufflinks 38.679     High  
cufflinks 40.343     High  
cufflinks 1499.806     High High
cufflinks 225.524     High  
cufflinks 44.137     High  
cufflinks 44.448     High  
cufflinks 22.013     High Low
cufflinks 248.653     High  
cufflinks 271.149     High  
cufflinks 54.216     High  
cufflinks 16.234     High Low
cufflinks 769.049     High High
cufflinks 279.924     High  
cufflinks 208.73     High  

0 Strain