Gene : Glyma.10G249100 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11771:SF53 - LINOLEATE 9S-LIPOXYGENASE 5, CHLOROPLASTIC Genomic Order:  2491
Name:  ? Glyma.10G249100 Secondary Identifier:  ? PAC:30473689
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5406 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G249100 0.5kb upstream 0.5kb upstream 2524 true Chr10: 47725125-47727648 Glycine max
Glyma.10G249100 0.5kb upstream 0.5kb upstream 500 false Chr10: 47727149-47727648 Glycine max
Glyma.10G249100 0.5kb downstream 0.5kb downstream 2524 true Chr10: 47724625-47727148 Glycine max
Glyma.10G249100 0.5kb downstream 0.5kb downstream 500 false Chr10: 47724625-47725124 Glycine max
Glyma.10G249100 1.0kb upstream 1.0kb upstream 3024 true Chr10: 47725125-47728148 Glycine max
Glyma.10G249100 1.0kb upstream 1.0kb upstream 1000 false Chr10: 47727149-47728148 Glycine max
Glyma.10G249100 1.0kb downstream 1.0kb downstream 3024 true Chr10: 47724125-47727148 Glycine max
Glyma.10G249100 1.0kb downstream 1.0kb downstream 1000 false Chr10: 47724125-47725124 Glycine max
Glyma.10G249100 2.0kb upstream 2.0kb upstream 4024 true Chr10: 47725125-47729148 Glycine max
Glyma.10G249100 2.0kb upstream 2.0kb upstream 2000 false Chr10: 47727149-47729148 Glycine max
Glyma.10G249100 2.0kb downstream 2.0kb downstream 4024 true Chr10: 47723125-47727148 Glycine max
Glyma.10G249100 2.0kb downstream 2.0kb downstream 2000 false Chr10: 47723125-47725124 Glycine max
Glyma.10G249100 5.0kb upstream 5.0kb upstream 7024 true Chr10: 47725125-47732148 Glycine max
Glyma.10G249100 5.0kb upstream 5.0kb upstream 5000 false Chr10: 47727149-47732148 Glycine max
Glyma.10G249100 5.0kb downstream 5.0kb downstream 7024 true Chr10: 47720125-47727148 Glycine max
Glyma.10G249100 5.0kb downstream 5.0kb downstream 5000 false Chr10: 47720125-47725124 Glycine max
Glyma.10G249100 10.0kb upstream 10.0kb upstream 12024 true Chr10: 47725125-47737148 Glycine max
Glyma.10G249100 10.0kb upstream 10.0kb upstream 10000 false Chr10: 47727149-47737148 Glycine max
Glyma.10G249100 10.0kb downstream 10.0kb downstream 12024 true Chr10: 47715125-47727148 Glycine max
Glyma.10G249100 10.0kb downstream 10.0kb downstream 10000 false Chr10: 47715125-47725124 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313161 5265 Fabidae View MSA
124071264 5270 Rosid View MSA
123750087 5271 Pentapetalae View MSA
122788853 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.475164 0.0 1.76452   Low
cufflinks 9.18383 0.0 25.1545    
cufflinks 4.35739 0.0 12.868    
cufflinks 21.8327 0.0 58.3204 High High
cufflinks 4.36322 0.0 12.9408    
cufflinks 4.9081 0.0 14.3314    
cufflinks 0.237367 0.0 0.909827   Low
cufflinks 1.10164 0.0 3.87396    
cufflinks 5.22035 0.0 15.1117    
cufflinks 2.693        
cufflinks 3.13        
cufflinks 5.103        
cufflinks 7.085       High
cufflinks 1.142        
cufflinks 1.264        
cufflinks 0.506       Low
cufflinks 7.217     High High
cufflinks 1.887        
cufflinks 17.369     High High
cufflinks 0.598       Low
cufflinks 4.698        
cufflinks 0.495       Low
cufflinks 1.061        
cufflinks 2.786        
cufflinks 0.462       Low
cufflinks 5.39        

0 Strain