Gene : Glyma.10G231200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31899:SF1 - BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  2312
Name:  ? Glyma.10G231200 Secondary Identifier:  ? PAC:30476349
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CAROTENOID-PWY Glycine max pathologic  
Gmax PWY-5944 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G231200 0.5kb upstream 0.5kb upstream 2918 true Chr10: 46092579-46095496 Glycine max
Glyma.10G231200 0.5kb upstream 0.5kb upstream 500 false Chr10: 46092579-46093078 Glycine max
Glyma.10G231200 0.5kb downstream 0.5kb downstream 2918 true Chr10: 46093079-46095996 Glycine max
Glyma.10G231200 0.5kb downstream 0.5kb downstream 500 false Chr10: 46095497-46095996 Glycine max
Glyma.10G231200 1.0kb upstream 1.0kb upstream 3418 true Chr10: 46092079-46095496 Glycine max
Glyma.10G231200 1.0kb upstream 1.0kb upstream 1000 false Chr10: 46092079-46093078 Glycine max
Glyma.10G231200 1.0kb downstream 1.0kb downstream 3418 true Chr10: 46093079-46096496 Glycine max
Glyma.10G231200 1.0kb downstream 1.0kb downstream 1000 false Chr10: 46095497-46096496 Glycine max
Glyma.10G231200 2.0kb upstream 2.0kb upstream 4418 true Chr10: 46091079-46095496 Glycine max
Glyma.10G231200 2.0kb upstream 2.0kb upstream 2000 false Chr10: 46091079-46093078 Glycine max
Glyma.10G231200 2.0kb downstream 2.0kb downstream 4418 true Chr10: 46093079-46097496 Glycine max
Glyma.10G231200 2.0kb downstream 2.0kb downstream 2000 false Chr10: 46095497-46097496 Glycine max
Glyma.10G231200 5.0kb upstream 5.0kb upstream 7418 true Chr10: 46088079-46095496 Glycine max
Glyma.10G231200 5.0kb upstream 5.0kb upstream 5000 false Chr10: 46088079-46093078 Glycine max
Glyma.10G231200 5.0kb downstream 5.0kb downstream 7418 true Chr10: 46093079-46100496 Glycine max
Glyma.10G231200 5.0kb downstream 5.0kb downstream 5000 false Chr10: 46095497-46100496 Glycine max
Glyma.10G231200 10.0kb upstream 10.0kb upstream 12418 true Chr10: 46083079-46095496 Glycine max
Glyma.10G231200 10.0kb upstream 10.0kb upstream 10000 false Chr10: 46083079-46093078 Glycine max
Glyma.10G231200 10.0kb downstream 10.0kb downstream 12418 true Chr10: 46093079-46105496 Glycine max
Glyma.10G231200 10.0kb downstream 10.0kb downstream 10000 false Chr10: 46095497-46105496 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310788 5265 Fabidae View MSA
124066838 5270 Rosid View MSA
123749049 5271 Pentapetalae View MSA
122787521 5272 Eudicot View MSA
122046641 5273 Angiosperm View MSA
123429104 5275 Viridiplantae View MSA
121351007 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.2443 0.0 62.752    
cufflinks 8.94761 0.0 35.0045    
cufflinks 85.6783 0.0 344.36 High High
cufflinks 3.62827 0.0 15.9223    
cufflinks 5.241 0.0 20.166    
cufflinks 4.45811 0.0 18.0204    
cufflinks 2.13437 0.0 10.9579   Low
cufflinks 5.14958 0.0 19.9558    
cufflinks 3.22258 0.0 14.7084    
cufflinks 2.193        
cufflinks 0.565        
cufflinks 13.197     High High
cufflinks 1.955        
cufflinks 1.798        
cufflinks 2.834        
cufflinks 0.574        
cufflinks 1.486        
cufflinks 7.402     High High
cufflinks 3.193        
cufflinks 0.35       Low
cufflinks 0.361       Low
cufflinks 0.476        
cufflinks 1.454        
cufflinks 0.187       Low
cufflinks 0.615        
cufflinks 0.72        

0 Strain