Gene : Glyma.10G272400 G. max Wm82.a2.v1
Defline:  (1 of 5) 6.1.1.16 - Cysteine--tRNA ligase / Cysteinyl-tRNA synthetase Genomic Order:  2724
Name:  ? Glyma.10G272400 Secondary Identifier:  ? PAC:30478187
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G272400 0.5kb upstream 0.5kb upstream 6793 true Chr10: 49469825-49476617 Glycine max
Glyma.10G272400 0.5kb upstream 0.5kb upstream 500 false Chr10: 49476118-49476617 Glycine max
Glyma.10G272400 0.5kb downstream 0.5kb downstream 6793 true Chr10: 49469325-49476117 Glycine max
Glyma.10G272400 0.5kb downstream 0.5kb downstream 500 false Chr10: 49469325-49469824 Glycine max
Glyma.10G272400 1.0kb upstream 1.0kb upstream 7293 true Chr10: 49469825-49477117 Glycine max
Glyma.10G272400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 49476118-49477117 Glycine max
Glyma.10G272400 1.0kb downstream 1.0kb downstream 7293 true Chr10: 49468825-49476117 Glycine max
Glyma.10G272400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 49468825-49469824 Glycine max
Glyma.10G272400 2.0kb upstream 2.0kb upstream 8293 true Chr10: 49469825-49478117 Glycine max
Glyma.10G272400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 49476118-49478117 Glycine max
Glyma.10G272400 2.0kb downstream 2.0kb downstream 8293 true Chr10: 49467825-49476117 Glycine max
Glyma.10G272400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 49467825-49469824 Glycine max
Glyma.10G272400 5.0kb upstream 5.0kb upstream 11293 true Chr10: 49469825-49481117 Glycine max
Glyma.10G272400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 49476118-49481117 Glycine max
Glyma.10G272400 5.0kb downstream 5.0kb downstream 11293 true Chr10: 49464825-49476117 Glycine max
Glyma.10G272400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 49464825-49469824 Glycine max
Glyma.10G272400 10.0kb upstream 10.0kb upstream 16293 true Chr10: 49469825-49486117 Glycine max
Glyma.10G272400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 49476118-49486117 Glycine max
Glyma.10G272400 10.0kb downstream 10.0kb downstream 16293 true Chr10: 49459825-49476117 Glycine max
Glyma.10G272400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 49459825-49469824 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306399 5265 Fabidae View MSA
124063129 5270 Rosid View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.592 0.0 55.0054    
cufflinks 12.3833 0.0 37.1427    
cufflinks 10.6293 0.0 39.1485   Low
cufflinks 13.4917 0.0 57.6048    
cufflinks 18.9164 0.0 56.7929   High
cufflinks 20.2716 0.0 83.8639   High
cufflinks 13.9473 0.0 41.2301    
cufflinks 13.6813 0.0 40.892    
cufflinks 16.6576 0.0 84.0752    
cufflinks 2.173        
cufflinks 1.013       Low
cufflinks 2.096        
cufflinks 4.33       High
cufflinks 5.352       High
cufflinks 1.226       Low
cufflinks 1.836        
cufflinks 1.412        
cufflinks 2.316        
cufflinks 2.428        
cufflinks 1.53        
cufflinks 1.523        
cufflinks 1.747        
cufflinks 2.064        
cufflinks 1.477        
cufflinks 1.667        
cufflinks 1.637        

0 Strain