Gene : Glyma.10G258400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31807:SF4 - PROTEIN SNOWY COTYLEDON 3-RELATED Genomic Order:  2584
Name:  ? Glyma.10G258400 Secondary Identifier:  ? PAC:30475371
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G258400 0.5kb upstream 0.5kb upstream 7160 true Chr10: 48461262-48468421 Glycine max
Glyma.10G258400 0.5kb upstream 0.5kb upstream 500 false Chr10: 48467922-48468421 Glycine max
Glyma.10G258400 0.5kb downstream 0.5kb downstream 7160 true Chr10: 48460762-48467921 Glycine max
Glyma.10G258400 0.5kb downstream 0.5kb downstream 500 false Chr10: 48460762-48461261 Glycine max
Glyma.10G258400 1.0kb upstream 1.0kb upstream 7660 true Chr10: 48461262-48468921 Glycine max
Glyma.10G258400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 48467922-48468921 Glycine max
Glyma.10G258400 1.0kb downstream 1.0kb downstream 7660 true Chr10: 48460262-48467921 Glycine max
Glyma.10G258400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 48460262-48461261 Glycine max
Glyma.10G258400 2.0kb upstream 2.0kb upstream 8660 true Chr10: 48461262-48469921 Glycine max
Glyma.10G258400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 48467922-48469921 Glycine max
Glyma.10G258400 2.0kb downstream 2.0kb downstream 8660 true Chr10: 48459262-48467921 Glycine max
Glyma.10G258400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 48459262-48461261 Glycine max
Glyma.10G258400 5.0kb upstream 5.0kb upstream 11660 true Chr10: 48461262-48472921 Glycine max
Glyma.10G258400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 48467922-48472921 Glycine max
Glyma.10G258400 5.0kb downstream 5.0kb downstream 11660 true Chr10: 48456262-48467921 Glycine max
Glyma.10G258400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 48456262-48461261 Glycine max
Glyma.10G258400 10.0kb upstream 10.0kb upstream 16660 true Chr10: 48461262-48477921 Glycine max
Glyma.10G258400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 48467922-48477921 Glycine max
Glyma.10G258400 10.0kb downstream 10.0kb downstream 16660 true Chr10: 48451262-48467921 Glycine max
Glyma.10G258400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 48451262-48461261 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300701 5265 Fabidae View MSA
124065184 5270 Rosid View MSA
123747124 5271 Pentapetalae View MSA
122796341 5272 Eudicot View MSA
122044458 5273 Angiosperm View MSA
121348675 5274 Embryophyte View MSA
123426167 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.44003 0.0 8.75696   Low
cufflinks 5.77617 0.0 34.3194   High
cufflinks 1.60329 0.0 10.303   Low
cufflinks 6.2452 0.0 30.8853   High
cufflinks 3.22898 0.0 20.9109    
cufflinks 2.51104 0.0 19.9087    
cufflinks 4.72159 0.0 24.2964    
cufflinks 4.23051 0.0 26.5155    
cufflinks 3.31653 0.0 22.6049    
cufflinks 0.582        
cufflinks 0.07       Low
cufflinks 0.32        
cufflinks 0.362        
cufflinks 0.359        
cufflinks 0.156        
cufflinks 0.856       High
cufflinks 0.168        
cufflinks 0.448        
cufflinks 0.946       High
cufflinks 0.868       High
cufflinks 0.13       Low
cufflinks 0.844       High
cufflinks 0.678        
cufflinks 0.104       Low
cufflinks 0.923       High
cufflinks 0.178        

0 Strain