Gene : Glyma.11G001100 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  11
Name:  ? Glyma.11G001100 Secondary Identifier:  ? PAC:30527675
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G001100 0.5kb upstream 0.5kb upstream 2915 true Chr11: 58325-61239 Glycine max
Glyma.11G001100 0.5kb upstream 0.5kb upstream 500 false Chr11: 58325-58824 Glycine max
Glyma.11G001100 0.5kb downstream 0.5kb downstream 2915 true Chr11: 58825-61739 Glycine max
Glyma.11G001100 0.5kb downstream 0.5kb downstream 500 false Chr11: 61240-61739 Glycine max
Glyma.11G001100 1.0kb upstream 1.0kb upstream 3415 true Chr11: 57825-61239 Glycine max
Glyma.11G001100 1.0kb upstream 1.0kb upstream 1000 false Chr11: 57825-58824 Glycine max
Glyma.11G001100 1.0kb downstream 1.0kb downstream 3415 true Chr11: 58825-62239 Glycine max
Glyma.11G001100 1.0kb downstream 1.0kb downstream 1000 false Chr11: 61240-62239 Glycine max
Glyma.11G001100 2.0kb upstream 2.0kb upstream 4415 true Chr11: 56825-61239 Glycine max
Glyma.11G001100 2.0kb upstream 2.0kb upstream 2000 false Chr11: 56825-58824 Glycine max
Glyma.11G001100 2.0kb downstream 2.0kb downstream 4415 true Chr11: 58825-63239 Glycine max
Glyma.11G001100 2.0kb downstream 2.0kb downstream 2000 false Chr11: 61240-63239 Glycine max
Glyma.11G001100 5.0kb upstream 5.0kb upstream 7415 true Chr11: 53825-61239 Glycine max
Glyma.11G001100 5.0kb upstream 5.0kb upstream 5000 false Chr11: 53825-58824 Glycine max
Glyma.11G001100 5.0kb downstream 5.0kb downstream 7415 true Chr11: 58825-66239 Glycine max
Glyma.11G001100 5.0kb downstream 5.0kb downstream 5000 false Chr11: 61240-66239 Glycine max
Glyma.11G001100 10.0kb upstream 10.0kb upstream 12415 true Chr11: 48825-61239 Glycine max
Glyma.11G001100 10.0kb upstream 10.0kb upstream 10000 false Chr11: 48825-58824 Glycine max
Glyma.11G001100 10.0kb downstream 10.0kb downstream 12415 true Chr11: 58825-71239 Glycine max
Glyma.11G001100 10.0kb downstream 10.0kb downstream 10000 false Chr11: 61240-71239 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122239088 5265 Fabidae Singleton cluster - no MSA
123984382 5270 Rosid Singleton cluster - no MSA
123559903 5271 Pentapetalae Singleton cluster - no MSA
122594707 5272 Eudicot Singleton cluster - no MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.018 0.0 34.9847   High
cufflinks 5.1562 0.0 14.9755    
cufflinks 9.49743 0.0 25.9572    
cufflinks 6.90844 0.0 19.393    
cufflinks 1.98291 0.0 6.5612   Low
cufflinks 1.00417 0.0 3.56185   Low
cufflinks 5.72983 0.0 16.4256    
cufflinks 7.82271 0.0 21.6798    
cufflinks 2.35841 0.0 7.6218    
cufflinks 2.921        
cufflinks 1.082       Low
cufflinks 6.983        
cufflinks 0.997       Low
cufflinks 0.797       Low
cufflinks 2.364        
cufflinks 7.891     High  
cufflinks 1.368        
cufflinks 5.556        
cufflinks 7.051        
cufflinks 12.019     High High
cufflinks 1.025       Low
cufflinks 11.448     High High
cufflinks 10.715     High High
cufflinks 1.394        
cufflinks 10.445     High High
cufflinks 0.894       Low

0 Strain