Gene : Glyma.10G295400 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10277//PTHR10277:SF42 - HOMOCITRATE SYNTHASE-RELATED Genomic Order:  2954
Name:  ? Glyma.10G295400 Secondary Identifier:  ? PAC:30474977
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax BRANCHED-CHAIN-AA-SYN-PWY Glycine max pathologic  
Gmax LEUSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G295400 0.5kb upstream 0.5kb upstream 9251 true Chr10: 51258130-51267380 Glycine max
Glyma.10G295400 0.5kb upstream 0.5kb upstream 500 false Chr10: 51258130-51258629 Glycine max
Glyma.10G295400 0.5kb downstream 0.5kb downstream 9251 true Chr10: 51258630-51267880 Glycine max
Glyma.10G295400 0.5kb downstream 0.5kb downstream 500 false Chr10: 51267381-51267880 Glycine max
Glyma.10G295400 1.0kb upstream 1.0kb upstream 9751 true Chr10: 51257630-51267380 Glycine max
Glyma.10G295400 1.0kb upstream 1.0kb upstream 1000 false Chr10: 51257630-51258629 Glycine max
Glyma.10G295400 1.0kb downstream 1.0kb downstream 9751 true Chr10: 51258630-51268380 Glycine max
Glyma.10G295400 1.0kb downstream 1.0kb downstream 1000 false Chr10: 51267381-51268380 Glycine max
Glyma.10G295400 2.0kb upstream 2.0kb upstream 10751 true Chr10: 51256630-51267380 Glycine max
Glyma.10G295400 2.0kb upstream 2.0kb upstream 2000 false Chr10: 51256630-51258629 Glycine max
Glyma.10G295400 2.0kb downstream 2.0kb downstream 10751 true Chr10: 51258630-51269380 Glycine max
Glyma.10G295400 2.0kb downstream 2.0kb downstream 2000 false Chr10: 51267381-51269380 Glycine max
Glyma.10G295400 5.0kb upstream 5.0kb upstream 13751 true Chr10: 51253630-51267380 Glycine max
Glyma.10G295400 5.0kb upstream 5.0kb upstream 5000 false Chr10: 51253630-51258629 Glycine max
Glyma.10G295400 5.0kb downstream 5.0kb downstream 13751 true Chr10: 51258630-51272380 Glycine max
Glyma.10G295400 5.0kb downstream 5.0kb downstream 5000 false Chr10: 51267381-51272380 Glycine max
Glyma.10G295400 10.0kb upstream 10.0kb upstream 18751 true Chr10: 51248630-51267380 Glycine max
Glyma.10G295400 10.0kb upstream 10.0kb upstream 10000 false Chr10: 51248630-51258629 Glycine max
Glyma.10G295400 10.0kb downstream 10.0kb downstream 18751 true Chr10: 51258630-51277380 Glycine max
Glyma.10G295400 10.0kb downstream 10.0kb downstream 10000 false Chr10: 51267381-51277380 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305643 5265 Fabidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.1226 0.0 185.722 High High
cufflinks 11.1214 0.0 36.8941    
cufflinks 9.01339 0.0 34.2018    
cufflinks 11.829 0.0 39.0813    
cufflinks 11.743 0.0 39.1058    
cufflinks 3.64978 0.0 12.8981   Low
cufflinks 11.1931 0.0 37.232    
cufflinks 8.75627 0.0 37.8566    
cufflinks 7.18613 0.0 25.1298    
cufflinks 0.725        
cufflinks 1.915       High
cufflinks 0.809        
cufflinks 0.985        
cufflinks 1.358        
cufflinks 1.472        
cufflinks 1.054        
cufflinks 0.529       Low
cufflinks 0.81        
cufflinks 1.339        
cufflinks 0.954        
cufflinks 2.119       High
cufflinks 0.933        
cufflinks 1.168        
cufflinks 2.592       High
cufflinks 0.995        
cufflinks 0.636       Low

0 Strain