Gene : Glyma.10G285300 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  2853
Name:  ? Glyma.10G285300 Secondary Identifier:  ? PAC:30478328
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.10G285300 0.5kb upstream 0.5kb upstream 3157 true Chr10: 50546072-50549228 Glycine max
Glyma.10G285300 0.5kb upstream 0.5kb upstream 500 false Chr10: 50546072-50546571 Glycine max
Glyma.10G285300 0.5kb downstream 0.5kb downstream 3157 true Chr10: 50546572-50549728 Glycine max
Glyma.10G285300 0.5kb downstream 0.5kb downstream 500 false Chr10: 50549229-50549728 Glycine max
Glyma.10G285300 1.0kb upstream 1.0kb upstream 3657 true Chr10: 50545572-50549228 Glycine max
Glyma.10G285300 1.0kb upstream 1.0kb upstream 1000 false Chr10: 50545572-50546571 Glycine max
Glyma.10G285300 1.0kb downstream 1.0kb downstream 3657 true Chr10: 50546572-50550228 Glycine max
Glyma.10G285300 1.0kb downstream 1.0kb downstream 1000 false Chr10: 50549229-50550228 Glycine max
Glyma.10G285300 2.0kb upstream 2.0kb upstream 4657 true Chr10: 50544572-50549228 Glycine max
Glyma.10G285300 2.0kb upstream 2.0kb upstream 2000 false Chr10: 50544572-50546571 Glycine max
Glyma.10G285300 2.0kb downstream 2.0kb downstream 4657 true Chr10: 50546572-50551228 Glycine max
Glyma.10G285300 2.0kb downstream 2.0kb downstream 2000 false Chr10: 50549229-50551228 Glycine max
Glyma.10G285300 5.0kb upstream 5.0kb upstream 7657 true Chr10: 50541572-50549228 Glycine max
Glyma.10G285300 5.0kb upstream 5.0kb upstream 5000 false Chr10: 50541572-50546571 Glycine max
Glyma.10G285300 5.0kb downstream 5.0kb downstream 7657 true Chr10: 50546572-50554228 Glycine max
Glyma.10G285300 5.0kb downstream 5.0kb downstream 5000 false Chr10: 50549229-50554228 Glycine max
Glyma.10G285300 10.0kb upstream 10.0kb upstream 12657 true Chr10: 50536572-50549228 Glycine max
Glyma.10G285300 10.0kb upstream 10.0kb upstream 10000 false Chr10: 50536572-50546571 Glycine max
Glyma.10G285300 10.0kb downstream 10.0kb downstream 12657 true Chr10: 50546572-50559228 Glycine max
Glyma.10G285300 10.0kb downstream 10.0kb downstream 10000 false Chr10: 50549229-50559228 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296707 5265 Fabidae View MSA
124062824 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.6727 0.0 57.8288    
cufflinks 17.3253 0.0 46.4521   Low
cufflinks 24.8084 0.0 66.1865 High High
cufflinks 19.7466 0.0 52.7657    
cufflinks 17.7394 0.0 47.4447    
cufflinks 19.1225 0.0 51.0984    
cufflinks 19.7988 0.0 52.8747    
cufflinks 19.3786 0.0 51.7891    
cufflinks 17.0954 0.0 45.8138   Low
cufflinks 5.06       Low
cufflinks 9.515     High  
cufflinks 8.042     High  
cufflinks 5.547       Low
cufflinks 4.75       Low
cufflinks 7.373     High  
cufflinks 9.084     High  
cufflinks 6.538     High  
cufflinks 6.05        
cufflinks 9.286     High  
cufflinks 8.382     High  
cufflinks 9.804     High  
cufflinks 8.656     High  
cufflinks 6.784        
cufflinks 10.49     High High
cufflinks 9.032     High  
cufflinks 10.3     High High

0 Strain