Gene : Glyma.11G025100 G. max Wm82.a2.v1
Defline:  (1 of 1) KOG0978//KOG0993//KOG4593 - E3 ubiquitin ligase involved in syntaxin degradation // Rab5 GTPase effector Rabaptin-5 // Mitotic checkpoint protein MAD1 Genomic Order:  251
Name:  ? Glyma.11G025100 Secondary Identifier:  ? PAC:30529520
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G025100 0.5kb upstream 0.5kb upstream 8200 true Chr11: 1773584-1781783 Glycine max
Glyma.11G025100 0.5kb upstream 0.5kb upstream 500 false Chr11: 1781284-1781783 Glycine max
Glyma.11G025100 0.5kb downstream 0.5kb downstream 8200 true Chr11: 1773084-1781283 Glycine max
Glyma.11G025100 0.5kb downstream 0.5kb downstream 500 false Chr11: 1773084-1773583 Glycine max
Glyma.11G025100 1.0kb upstream 1.0kb upstream 8700 true Chr11: 1773584-1782283 Glycine max
Glyma.11G025100 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1781284-1782283 Glycine max
Glyma.11G025100 1.0kb downstream 1.0kb downstream 8700 true Chr11: 1772584-1781283 Glycine max
Glyma.11G025100 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1772584-1773583 Glycine max
Glyma.11G025100 2.0kb upstream 2.0kb upstream 9700 true Chr11: 1773584-1783283 Glycine max
Glyma.11G025100 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1781284-1783283 Glycine max
Glyma.11G025100 2.0kb downstream 2.0kb downstream 9700 true Chr11: 1771584-1781283 Glycine max
Glyma.11G025100 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1771584-1773583 Glycine max
Glyma.11G025100 5.0kb upstream 5.0kb upstream 12700 true Chr11: 1773584-1786283 Glycine max
Glyma.11G025100 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1781284-1786283 Glycine max
Glyma.11G025100 5.0kb downstream 5.0kb downstream 12700 true Chr11: 1768584-1781283 Glycine max
Glyma.11G025100 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1768584-1773583 Glycine max
Glyma.11G025100 10.0kb upstream 10.0kb upstream 17700 true Chr11: 1773584-1791283 Glycine max
Glyma.11G025100 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1781284-1791283 Glycine max
Glyma.11G025100 10.0kb downstream 10.0kb downstream 17700 true Chr11: 1763584-1781283 Glycine max
Glyma.11G025100 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1763584-1773583 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040955 5273 Angiosperm View MSA
122311542 5265 Fabidae View MSA
124066145 5270 Rosid View MSA
123747619 5271 Pentapetalae View MSA
122785648 5272 Eudicot View MSA
121348283 5274 Embryophyte View MSA
123428094 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.163849 0.0 0.793789 Low Low
cufflinks 2.54464 0.0 8.25994    
cufflinks 0.295505 0.0 1.28889   Low
cufflinks 1.8631 0.0 6.46759    
cufflinks 0.854532 0.0 2.89952    
cufflinks 1.9855 0.0 6.81145    
cufflinks 2.6518 0.0 8.6097    
cufflinks 2.1679 0.0 7.19464    
cufflinks 4.14892 0.0 12.5858   High
cufflinks 1.137        
cufflinks 0.051     Low Low
cufflinks 0.329        
cufflinks 0.358        
cufflinks 0.202        
cufflinks 0.684        
cufflinks 0.902        
cufflinks 0.123        
cufflinks 0.85        
cufflinks 1.123        
cufflinks 0.716        
cufflinks 0.064       Low
cufflinks 0.884        
cufflinks 1.094        
cufflinks 0.044     Low Low
cufflinks 0.923        
cufflinks 0.123        

0 Strain