Gene : Glyma.11G027000 G. max Wm82.a2.v1
Defline:  (1 of 7) 2.3.3.10 - Hydroxymethylglutaryl-CoA synthase / Hydroxymethylglutaryl coenzyme alpha-condensing enzyme Genomic Order:  270
Name:  ? Glyma.11G027000 Secondary Identifier:  ? PAC:30531342
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5910 Glycine max pathologic  
Gmax PWY-922 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G027000 0.5kb upstream 0.5kb upstream 6956 true Chr11: 1935308-1942263 Glycine max
Glyma.11G027000 0.5kb upstream 0.5kb upstream 500 false Chr11: 1935308-1935807 Glycine max
Glyma.11G027000 0.5kb downstream 0.5kb downstream 6956 true Chr11: 1935808-1942763 Glycine max
Glyma.11G027000 0.5kb downstream 0.5kb downstream 500 false Chr11: 1942264-1942763 Glycine max
Glyma.11G027000 1.0kb upstream 1.0kb upstream 7456 true Chr11: 1934808-1942263 Glycine max
Glyma.11G027000 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1934808-1935807 Glycine max
Glyma.11G027000 1.0kb downstream 1.0kb downstream 7456 true Chr11: 1935808-1943263 Glycine max
Glyma.11G027000 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1942264-1943263 Glycine max
Glyma.11G027000 2.0kb upstream 2.0kb upstream 8456 true Chr11: 1933808-1942263 Glycine max
Glyma.11G027000 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1933808-1935807 Glycine max
Glyma.11G027000 2.0kb downstream 2.0kb downstream 8456 true Chr11: 1935808-1944263 Glycine max
Glyma.11G027000 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1942264-1944263 Glycine max
Glyma.11G027000 5.0kb upstream 5.0kb upstream 11456 true Chr11: 1930808-1942263 Glycine max
Glyma.11G027000 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1930808-1935807 Glycine max
Glyma.11G027000 5.0kb downstream 5.0kb downstream 11456 true Chr11: 1935808-1947263 Glycine max
Glyma.11G027000 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1942264-1947263 Glycine max
Glyma.11G027000 10.0kb upstream 10.0kb upstream 16456 true Chr11: 1925808-1942263 Glycine max
Glyma.11G027000 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1925808-1935807 Glycine max
Glyma.11G027000 10.0kb downstream 10.0kb downstream 16456 true Chr11: 1935808-1952263 Glycine max
Glyma.11G027000 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1942264-1952263 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311073 5265 Fabidae View MSA
124060634 5270 Rosid View MSA
123746885 5271 Pentapetalae View MSA
122791824 5272 Eudicot View MSA
122042701 5273 Angiosperm View MSA
121346246 5274 Embryophyte View MSA
123424795 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.6522 0.0 28.6202   Low
cufflinks 34.4133 0.0 95.2332 High  
cufflinks 11.5764 0.0 30.968   Low
cufflinks 34.8631 0.0 96.5676 High  
cufflinks 117.972 0.0 391.485 High High
cufflinks 86.7577 0.0 272.388 High High
cufflinks 15.7066 0.0 41.9033    
cufflinks 35.6011 0.0 98.7324 High  
cufflinks 64.3046 0.0 192.028 High  
cufflinks 28.913     High High
cufflinks 1.774       Low
cufflinks 11.55     High  
cufflinks 37.633     High High
cufflinks 47.225     High High
cufflinks 1.205       Low
cufflinks 5.718        
cufflinks 16.113     High  
cufflinks 13.764     High  
cufflinks 27.557     High High
cufflinks 2.425        
cufflinks 3.581        
cufflinks 3.724        
cufflinks 15.169     High  
cufflinks 1.531       Low
cufflinks 3.856        
cufflinks 9.15     High  

0 Strain