Gene : Glyma.11G030500 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR22904//PTHR22904:SF355 - TPR REPEAT CONTAINING PROTEIN Genomic Order:  305
Name:  ? Glyma.11G030500 Secondary Identifier:  ? PAC:30527945
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G030500 0.5kb upstream 0.5kb upstream 5543 true Chr11: 2203906-2209448 Glycine max
Glyma.11G030500 0.5kb upstream 0.5kb upstream 500 false Chr11: 2208949-2209448 Glycine max
Glyma.11G030500 0.5kb downstream 0.5kb downstream 5543 true Chr11: 2203406-2208948 Glycine max
Glyma.11G030500 0.5kb downstream 0.5kb downstream 500 false Chr11: 2203406-2203905 Glycine max
Glyma.11G030500 1.0kb upstream 1.0kb upstream 6043 true Chr11: 2203906-2209948 Glycine max
Glyma.11G030500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 2208949-2209948 Glycine max
Glyma.11G030500 1.0kb downstream 1.0kb downstream 6043 true Chr11: 2202906-2208948 Glycine max
Glyma.11G030500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 2202906-2203905 Glycine max
Glyma.11G030500 2.0kb upstream 2.0kb upstream 7043 true Chr11: 2203906-2210948 Glycine max
Glyma.11G030500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 2208949-2210948 Glycine max
Glyma.11G030500 2.0kb downstream 2.0kb downstream 7043 true Chr11: 2201906-2208948 Glycine max
Glyma.11G030500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 2201906-2203905 Glycine max
Glyma.11G030500 5.0kb upstream 5.0kb upstream 10043 true Chr11: 2203906-2213948 Glycine max
Glyma.11G030500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 2208949-2213948 Glycine max
Glyma.11G030500 5.0kb downstream 5.0kb downstream 10043 true Chr11: 2198906-2208948 Glycine max
Glyma.11G030500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 2198906-2203905 Glycine max
Glyma.11G030500 10.0kb upstream 10.0kb upstream 15043 true Chr11: 2203906-2218948 Glycine max
Glyma.11G030500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 2208949-2218948 Glycine max
Glyma.11G030500 10.0kb downstream 10.0kb downstream 15043 true Chr11: 2193906-2208948 Glycine max
Glyma.11G030500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 2193906-2203905 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308522 5265 Fabidae View MSA
124050195 5270 Rosid View MSA
123742862 5271 Pentapetalae View MSA
122790391 5272 Eudicot View MSA
122044378 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121343980 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.5302 0.0 41.4445    
cufflinks 13.1671 0.0 47.8827    
cufflinks 8.44283 0.0 30.3222   Low
cufflinks 25.788 0.0 105.984 High High
cufflinks 26.9066 0.0 110.875 High High
cufflinks 13.9886 0.0 51.1305    
cufflinks 10.4103 0.0 36.2026    
cufflinks 14.01 0.0 50.8907    
cufflinks 19.0396 0.0 72.7892    
cufflinks 4.192        
cufflinks 6.148     High  
cufflinks 4.91        
cufflinks 11.122     High High
cufflinks 13.75     High High
cufflinks 4.038        
cufflinks 1.815       Low
cufflinks 4.024        
cufflinks 5.351        
cufflinks 5.894        
cufflinks 1.646       Low
cufflinks 3.554        
cufflinks 1.833       Low
cufflinks 3.004        
cufflinks 2.86        
cufflinks 1.714       Low
cufflinks 4.568        

0 Strain