Gene : Glyma.11G030900 G. max Wm82.a2.v1
Defline:  (1 of 30) PF04640 - PLATZ transcription factor (PLATZ) Genomic Order:  309
Name:  ? Glyma.11G030900 Secondary Identifier:  ? PAC:30530192
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G030900 0.5kb upstream 0.5kb upstream 2230 true Chr11: 2234077-2236306 Glycine max
Glyma.11G030900 0.5kb upstream 0.5kb upstream 500 false Chr11: 2234077-2234576 Glycine max
Glyma.11G030900 0.5kb downstream 0.5kb downstream 2230 true Chr11: 2234577-2236806 Glycine max
Glyma.11G030900 0.5kb downstream 0.5kb downstream 500 false Chr11: 2236307-2236806 Glycine max
Glyma.11G030900 1.0kb upstream 1.0kb upstream 2730 true Chr11: 2233577-2236306 Glycine max
Glyma.11G030900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 2233577-2234576 Glycine max
Glyma.11G030900 1.0kb downstream 1.0kb downstream 2730 true Chr11: 2234577-2237306 Glycine max
Glyma.11G030900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 2236307-2237306 Glycine max
Glyma.11G030900 2.0kb upstream 2.0kb upstream 3730 true Chr11: 2232577-2236306 Glycine max
Glyma.11G030900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 2232577-2234576 Glycine max
Glyma.11G030900 2.0kb downstream 2.0kb downstream 3730 true Chr11: 2234577-2238306 Glycine max
Glyma.11G030900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 2236307-2238306 Glycine max
Glyma.11G030900 5.0kb upstream 5.0kb upstream 6730 true Chr11: 2229577-2236306 Glycine max
Glyma.11G030900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 2229577-2234576 Glycine max
Glyma.11G030900 5.0kb downstream 5.0kb downstream 6730 true Chr11: 2234577-2241306 Glycine max
Glyma.11G030900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 2236307-2241306 Glycine max
Glyma.11G030900 10.0kb upstream 10.0kb upstream 11730 true Chr11: 2224577-2236306 Glycine max
Glyma.11G030900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 2224577-2234576 Glycine max
Glyma.11G030900 10.0kb downstream 10.0kb downstream 11730 true Chr11: 2234577-2246306 Glycine max
Glyma.11G030900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 2236307-2246306 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254818 5265 Fabidae View MSA
124069177 5270 Rosid View MSA
123750215 5271 Pentapetalae View MSA
122789413 5272 Eudicot View MSA
122043598 5273 Angiosperm View MSA
121349888 5274 Embryophyte View MSA
123428703 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.26861 0.0 4.59416    
cufflinks 0.0208457 0.0 0.0945356 Low Low
cufflinks 1.32267 0.0 4.76898    
cufflinks 0.607022 0.0 2.28297    
cufflinks 0.223308 0.0 0.877035 Low  
cufflinks 0.283947 0.0 1.10472 Low  
cufflinks 0.0579376 0.0 0.241924 Low  
cufflinks 2.07347 0.0 7.21912   High
cufflinks 0.0640361 0.0 0.265073 Low  
cufflinks 5.435       High
cufflinks 1.201        
cufflinks 1.825        
cufflinks 0.091     Low Low
cufflinks 0.2        
cufflinks 0.27        
cufflinks 1.18        
cufflinks 22.359     High High
cufflinks 0.077     Low Low
cufflinks 0.025     Low Low
cufflinks 0.125        
cufflinks 1.15        
cufflinks 0.249        
cufflinks 0.157        
cufflinks 0.855        
cufflinks 0.699        
cufflinks 1.095        

0 Strain