Gene : Glyma.11G018600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11246//PTHR11246:SF14 - PRE-MRNA SPLICING FACTOR Genomic Order:  186
Name:  ? Glyma.11G018600 Secondary Identifier:  ? PAC:30530164
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G018600 0.5kb upstream 0.5kb upstream 5259 true Chr11: 1297668-1302926 Glycine max
Glyma.11G018600 0.5kb upstream 0.5kb upstream 500 false Chr11: 1302427-1302926 Glycine max
Glyma.11G018600 0.5kb downstream 0.5kb downstream 5259 true Chr11: 1297168-1302426 Glycine max
Glyma.11G018600 0.5kb downstream 0.5kb downstream 500 false Chr11: 1297168-1297667 Glycine max
Glyma.11G018600 1.0kb upstream 1.0kb upstream 5759 true Chr11: 1297668-1303426 Glycine max
Glyma.11G018600 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1302427-1303426 Glycine max
Glyma.11G018600 1.0kb downstream 1.0kb downstream 5759 true Chr11: 1296668-1302426 Glycine max
Glyma.11G018600 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1296668-1297667 Glycine max
Glyma.11G018600 2.0kb upstream 2.0kb upstream 6759 true Chr11: 1297668-1304426 Glycine max
Glyma.11G018600 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1302427-1304426 Glycine max
Glyma.11G018600 2.0kb downstream 2.0kb downstream 6759 true Chr11: 1295668-1302426 Glycine max
Glyma.11G018600 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1295668-1297667 Glycine max
Glyma.11G018600 5.0kb upstream 5.0kb upstream 9759 true Chr11: 1297668-1307426 Glycine max
Glyma.11G018600 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1302427-1307426 Glycine max
Glyma.11G018600 5.0kb downstream 5.0kb downstream 9759 true Chr11: 1292668-1302426 Glycine max
Glyma.11G018600 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1292668-1297667 Glycine max
Glyma.11G018600 10.0kb upstream 10.0kb upstream 14759 true Chr11: 1297668-1312426 Glycine max
Glyma.11G018600 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1302427-1312426 Glycine max
Glyma.11G018600 10.0kb downstream 10.0kb downstream 14759 true Chr11: 1287668-1302426 Glycine max
Glyma.11G018600 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1287668-1297667 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306800 5265 Fabidae View MSA
124066520 5270 Rosid View MSA
123747782 5271 Pentapetalae View MSA
122796524 5272 Eudicot View MSA
122043261 5273 Angiosperm View MSA
121344122 5274 Embryophyte View MSA
123426639 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.17806 0.0 24.5017    
cufflinks 10.1081 0.0 26.9689    
cufflinks 6.59123 0.0 17.7665   Low
cufflinks 10.7763 0.0 28.7522   High
cufflinks 7.97721 0.0 21.3448    
cufflinks 7.836 0.0 20.9835    
cufflinks 9.29006 0.0 24.7986    
cufflinks 11.0918 0.0 29.598   High
cufflinks 8.92491 0.0 23.8373    
cufflinks 5.814        
cufflinks 4.115       Low
cufflinks 7.322     High  
cufflinks 6.576        
cufflinks 7.557     High  
cufflinks 3.638       Low
cufflinks 7.326     High  
cufflinks 6.366     High  
cufflinks 7.713     High  
cufflinks 7.54     High  
cufflinks 6.18        
cufflinks 6.12     High  
cufflinks 7.337     High  
cufflinks 7.617     High  
cufflinks 5.57        
cufflinks 6.681        
cufflinks 6.834     High  

0 Strain