Gene : Glyma.11G023900 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR31500:SF9 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN Genomic Order:  239
Name:  ? Glyma.11G023900 Secondary Identifier:  ? PAC:30529537
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G023900 0.5kb upstream 0.5kb upstream 4991 true Chr11: 1720378-1725368 Glycine max
Glyma.11G023900 0.5kb upstream 0.5kb upstream 500 false Chr11: 1720378-1720877 Glycine max
Glyma.11G023900 0.5kb downstream 0.5kb downstream 4991 true Chr11: 1720878-1725868 Glycine max
Glyma.11G023900 0.5kb downstream 0.5kb downstream 500 false Chr11: 1725369-1725868 Glycine max
Glyma.11G023900 1.0kb upstream 1.0kb upstream 5491 true Chr11: 1719878-1725368 Glycine max
Glyma.11G023900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1719878-1720877 Glycine max
Glyma.11G023900 1.0kb downstream 1.0kb downstream 5491 true Chr11: 1720878-1726368 Glycine max
Glyma.11G023900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1725369-1726368 Glycine max
Glyma.11G023900 2.0kb upstream 2.0kb upstream 6491 true Chr11: 1718878-1725368 Glycine max
Glyma.11G023900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1718878-1720877 Glycine max
Glyma.11G023900 2.0kb downstream 2.0kb downstream 6491 true Chr11: 1720878-1727368 Glycine max
Glyma.11G023900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1725369-1727368 Glycine max
Glyma.11G023900 5.0kb upstream 5.0kb upstream 9491 true Chr11: 1715878-1725368 Glycine max
Glyma.11G023900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1715878-1720877 Glycine max
Glyma.11G023900 5.0kb downstream 5.0kb downstream 9491 true Chr11: 1720878-1730368 Glycine max
Glyma.11G023900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1725369-1730368 Glycine max
Glyma.11G023900 10.0kb upstream 10.0kb upstream 14491 true Chr11: 1710878-1725368 Glycine max
Glyma.11G023900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1710878-1720877 Glycine max
Glyma.11G023900 10.0kb downstream 10.0kb downstream 14491 true Chr11: 1720878-1735368 Glycine max
Glyma.11G023900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1725369-1735368 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041209 5273 Angiosperm View MSA
122313291 5265 Fabidae View MSA
124069510 5270 Rosid View MSA
123741988 5271 Pentapetalae View MSA
122789787 5272 Eudicot View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.88824 0.0 19.0982   Low
cufflinks 46.1453 0.0 130.363 High High
cufflinks 7.2071 0.0 19.8618    
cufflinks 16.7461 0.0 44.6775    
cufflinks 14.3242 0.0 38.2553    
cufflinks 5.95976 0.0 16.7329   Low
cufflinks 29.6219 0.0 80.4868 High High
cufflinks 15.6205 0.0 41.6773    
cufflinks 11.1936 0.0 30.0799    
cufflinks 8.449     High  
cufflinks 1.058       Low
cufflinks 7.671     High  
cufflinks 5.626        
cufflinks 7.658     High  
cufflinks 0.766       Low
cufflinks 10.815     High  
cufflinks 2.279        
cufflinks 10.796     High  
cufflinks 23.64     High High
cufflinks 9.662     High  
cufflinks 1.498       Low
cufflinks 10.305     High  
cufflinks 13.846     High  
cufflinks 1.419       Low
cufflinks 8.861     High  
cufflinks 1.813        

0 Strain