Gene : Glyma.11G016000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10338:SF126 - MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC Genomic Order:  160
Name:  ? Glyma.11G016000 Secondary Identifier:  ? PAC:30529971
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CHLOROPHYLL-SYN Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G016000 0.5kb upstream 0.5kb upstream 10883 true Chr11: 1118120-1129002 Glycine max
Glyma.11G016000 0.5kb upstream 0.5kb upstream 500 false Chr11: 1128503-1129002 Glycine max
Glyma.11G016000 0.5kb downstream 0.5kb downstream 10883 true Chr11: 1117620-1128502 Glycine max
Glyma.11G016000 0.5kb downstream 0.5kb downstream 500 false Chr11: 1117620-1118119 Glycine max
Glyma.11G016000 1.0kb upstream 1.0kb upstream 11383 true Chr11: 1118120-1129502 Glycine max
Glyma.11G016000 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1128503-1129502 Glycine max
Glyma.11G016000 1.0kb downstream 1.0kb downstream 11383 true Chr11: 1117120-1128502 Glycine max
Glyma.11G016000 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1117120-1118119 Glycine max
Glyma.11G016000 2.0kb upstream 2.0kb upstream 12383 true Chr11: 1118120-1130502 Glycine max
Glyma.11G016000 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1128503-1130502 Glycine max
Glyma.11G016000 2.0kb downstream 2.0kb downstream 12383 true Chr11: 1116120-1128502 Glycine max
Glyma.11G016000 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1116120-1118119 Glycine max
Glyma.11G016000 5.0kb upstream 5.0kb upstream 15383 true Chr11: 1118120-1133502 Glycine max
Glyma.11G016000 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1128503-1133502 Glycine max
Glyma.11G016000 5.0kb downstream 5.0kb downstream 15383 true Chr11: 1113120-1128502 Glycine max
Glyma.11G016000 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1113120-1118119 Glycine max
Glyma.11G016000 10.0kb upstream 10.0kb upstream 20383 true Chr11: 1118120-1138502 Glycine max
Glyma.11G016000 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1128503-1138502 Glycine max
Glyma.11G016000 10.0kb downstream 10.0kb downstream 20383 true Chr11: 1108120-1128502 Glycine max
Glyma.11G016000 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1108120-1118119 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026552 5273 Angiosperm View MSA
122304637 5265 Fabidae View MSA
124050211 5270 Rosid View MSA
123740767 5271 Pentapetalae View MSA
122793676 5272 Eudicot View MSA
121344824 5274 Embryophyte View MSA
123424530 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.9555 0.0 61.3777   High
cufflinks 8.28308 0.0 31.7836    
cufflinks 4.46166 0.0 14.4647    
cufflinks 5.21418 0.0 19.4063    
cufflinks 4.29608 0.0 16.2976    
cufflinks 2.0974 0.0 9.94649   Low
cufflinks 8.67849 0.0 33.549    
cufflinks 4.00026 0.0 15.4027    
cufflinks 3.33394 0.0 15.2931    
cufflinks 0.636        
cufflinks 0.225       Low
cufflinks 0.627        
cufflinks 0.255        
cufflinks 0.292        
cufflinks 0.62        
cufflinks 2.988       High
cufflinks 0.226       Low
cufflinks 0.689        
cufflinks 1.104        
cufflinks 3.813       High
cufflinks 0.278        
cufflinks 3.168       High
cufflinks 2.146       High
cufflinks 0.218       Low
cufflinks 3.386       High
cufflinks 0.223       Low

0 Strain