Gene : Glyma.11G007200 G. max Wm82.a2.v1
Defline:  (1 of 113) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  72
Name:  ? Glyma.11G007200 Secondary Identifier:  ? PAC:30528652
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G007200 0.5kb upstream 0.5kb upstream 3735 true Chr11: 507218-510952 Glycine max
Glyma.11G007200 0.5kb upstream 0.5kb upstream 500 false Chr11: 507218-507717 Glycine max
Glyma.11G007200 0.5kb downstream 0.5kb downstream 3735 true Chr11: 507718-511452 Glycine max
Glyma.11G007200 0.5kb downstream 0.5kb downstream 500 false Chr11: 510953-511452 Glycine max
Glyma.11G007200 1.0kb upstream 1.0kb upstream 4235 true Chr11: 506718-510952 Glycine max
Glyma.11G007200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 506718-507717 Glycine max
Glyma.11G007200 1.0kb downstream 1.0kb downstream 4235 true Chr11: 507718-511952 Glycine max
Glyma.11G007200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 510953-511952 Glycine max
Glyma.11G007200 2.0kb upstream 2.0kb upstream 5235 true Chr11: 505718-510952 Glycine max
Glyma.11G007200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 505718-507717 Glycine max
Glyma.11G007200 2.0kb downstream 2.0kb downstream 5235 true Chr11: 507718-512952 Glycine max
Glyma.11G007200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 510953-512952 Glycine max
Glyma.11G007200 5.0kb upstream 5.0kb upstream 8235 true Chr11: 502718-510952 Glycine max
Glyma.11G007200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 502718-507717 Glycine max
Glyma.11G007200 5.0kb downstream 5.0kb downstream 8235 true Chr11: 507718-515952 Glycine max
Glyma.11G007200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 510953-515952 Glycine max
Glyma.11G007200 10.0kb upstream 10.0kb upstream 13235 true Chr11: 497718-510952 Glycine max
Glyma.11G007200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 497718-507717 Glycine max
Glyma.11G007200 10.0kb downstream 10.0kb downstream 13235 true Chr11: 507718-520952 Glycine max
Glyma.11G007200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 510953-520952 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306249 5265 Fabidae View MSA
124069931 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.13216 0.0 3.67237   High
cufflinks 0.397878 0.0 1.43301    
cufflinks 0.415714 0.0 1.48808    
cufflinks 0.470012 0.0 1.67139    
cufflinks 0.286624 0.0 1.05364    
cufflinks 0.210364 0.0 0.784957 Low Low
cufflinks 0.459013 0.0 1.63774    
cufflinks 0.255124 0.0 0.942861    
cufflinks 0.288629 0.0 1.05989    
cufflinks 0.249        
cufflinks 0.14       Low
cufflinks 0.652       High
cufflinks 0.355        
cufflinks 0.394        
cufflinks 0.141       Low
cufflinks 0.429        
cufflinks 0.276        
cufflinks 0.603       High
cufflinks 0.325        
cufflinks 0.413        
cufflinks 0.147       Low
cufflinks 0.43        
cufflinks 0.617       High
cufflinks 0.135       Low
cufflinks 0.42        
cufflinks 0.164       Low

0 Strain