Gene : Glyma.11G048900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21314:SF0 - UPF0553 PROTEIN C9ORF64 Genomic Order:  489
Name:  ? Glyma.11G048900 Secondary Identifier:  ? PAC:30531048
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G048900 0.5kb upstream 0.5kb upstream 4403 true Chr11: 3687370-3691772 Glycine max
Glyma.11G048900 0.5kb upstream 0.5kb upstream 500 false Chr11: 3687370-3687869 Glycine max
Glyma.11G048900 0.5kb downstream 0.5kb downstream 4403 true Chr11: 3687870-3692272 Glycine max
Glyma.11G048900 0.5kb downstream 0.5kb downstream 500 false Chr11: 3691773-3692272 Glycine max
Glyma.11G048900 1.0kb upstream 1.0kb upstream 4903 true Chr11: 3686870-3691772 Glycine max
Glyma.11G048900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 3686870-3687869 Glycine max
Glyma.11G048900 1.0kb downstream 1.0kb downstream 4903 true Chr11: 3687870-3692772 Glycine max
Glyma.11G048900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 3691773-3692772 Glycine max
Glyma.11G048900 2.0kb upstream 2.0kb upstream 5903 true Chr11: 3685870-3691772 Glycine max
Glyma.11G048900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 3685870-3687869 Glycine max
Glyma.11G048900 2.0kb downstream 2.0kb downstream 5903 true Chr11: 3687870-3693772 Glycine max
Glyma.11G048900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 3691773-3693772 Glycine max
Glyma.11G048900 5.0kb upstream 5.0kb upstream 8903 true Chr11: 3682870-3691772 Glycine max
Glyma.11G048900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3682870-3687869 Glycine max
Glyma.11G048900 5.0kb downstream 5.0kb downstream 8903 true Chr11: 3687870-3696772 Glycine max
Glyma.11G048900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 3691773-3696772 Glycine max
Glyma.11G048900 10.0kb upstream 10.0kb upstream 13903 true Chr11: 3677870-3691772 Glycine max
Glyma.11G048900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3677870-3687869 Glycine max
Glyma.11G048900 10.0kb downstream 10.0kb downstream 13903 true Chr11: 3687870-3701772 Glycine max
Glyma.11G048900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 3691773-3701772 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312059 5265 Fabidae View MSA
124070821 5270 Rosid View MSA
123742373 5271 Pentapetalae View MSA
122795462 5272 Eudicot View MSA
122048860 5273 Angiosperm View MSA
121348381 5274 Embryophyte View MSA
123425708 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.53219 0.0 8.80337    
cufflinks 4.71838 0.0 20.1093    
cufflinks 1.51042 0.0 9.18994   Low
cufflinks 2.29144 0.0 12.5895    
cufflinks 5.42351 0.0 22.1543   High
cufflinks 4.59662 0.0 19.7612    
cufflinks 4.9056 0.0 20.8391    
cufflinks 2.32453 0.0 8.41489    
cufflinks 4.17488 0.0 18.4475    
cufflinks 1.616       High
cufflinks 0.489        
cufflinks 0.727        
cufflinks 1.052        
cufflinks 1.409       High
cufflinks 0.464        
cufflinks 0.295        
cufflinks 3.298       High
cufflinks 0.802        
cufflinks 1.18        
cufflinks 0.214       Low
cufflinks 0.366        
cufflinks 0.237       Low
cufflinks 1.206        
cufflinks 0.292        
cufflinks 0.26       Low
cufflinks 0.445        

0 Strain