Gene : Glyma.11G052200 G. max Wm82.a2.v1
Defline:  (1 of 2) PF00307//PF03271 - Calponin homology (CH) domain (CH) // EB1-like C-terminal motif (EB1) Genomic Order:  522
Name:  ? Glyma.11G052200 Secondary Identifier:  ? PAC:30530564
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G052200 0.5kb upstream 0.5kb upstream 3874 true Chr11: 3930152-3934025 Glycine max
Glyma.11G052200 0.5kb upstream 0.5kb upstream 500 false Chr11: 3930152-3930651 Glycine max
Glyma.11G052200 0.5kb downstream 0.5kb downstream 3874 true Chr11: 3930652-3934525 Glycine max
Glyma.11G052200 0.5kb downstream 0.5kb downstream 500 false Chr11: 3934026-3934525 Glycine max
Glyma.11G052200 1.0kb upstream 1.0kb upstream 4374 true Chr11: 3929652-3934025 Glycine max
Glyma.11G052200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 3929652-3930651 Glycine max
Glyma.11G052200 1.0kb downstream 1.0kb downstream 4374 true Chr11: 3930652-3935025 Glycine max
Glyma.11G052200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 3934026-3935025 Glycine max
Glyma.11G052200 2.0kb upstream 2.0kb upstream 5374 true Chr11: 3928652-3934025 Glycine max
Glyma.11G052200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 3928652-3930651 Glycine max
Glyma.11G052200 2.0kb downstream 2.0kb downstream 5374 true Chr11: 3930652-3936025 Glycine max
Glyma.11G052200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 3934026-3936025 Glycine max
Glyma.11G052200 5.0kb upstream 5.0kb upstream 8374 true Chr11: 3925652-3934025 Glycine max
Glyma.11G052200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3925652-3930651 Glycine max
Glyma.11G052200 5.0kb downstream 5.0kb downstream 8374 true Chr11: 3930652-3939025 Glycine max
Glyma.11G052200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 3934026-3939025 Glycine max
Glyma.11G052200 10.0kb upstream 10.0kb upstream 13374 true Chr11: 3920652-3934025 Glycine max
Glyma.11G052200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3920652-3930651 Glycine max
Glyma.11G052200 10.0kb downstream 10.0kb downstream 13374 true Chr11: 3930652-3944025 Glycine max
Glyma.11G052200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 3934026-3944025 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304498 5265 Fabidae View MSA
124060698 5270 Rosid View MSA
123746980 5271 Pentapetalae View MSA
122791454 5272 Eudicot View MSA
122044104 5273 Angiosperm View MSA
121351691 5274 Embryophyte View MSA
123424537 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0654976 0.0 0.264131 Low Low
cufflinks 16.6771 0.0 44.5429    
cufflinks 2.31534 0.0 7.52886    
cufflinks 4.59913 0.0 13.5663    
cufflinks 8.2262 0.0 22.7428    
cufflinks 9.5841 0.0 26.2129    
cufflinks 8.19299 0.0 22.6838    
cufflinks 7.2469 0.0 20.2636    
cufflinks 8.2575 0.0 22.838    
cufflinks 4.202        
cufflinks 0.471       Low
cufflinks 2.609        
cufflinks 7.446     High  
cufflinks 7.875     High  
cufflinks 0.112       Low
cufflinks 6.686        
cufflinks 1.203        
cufflinks 1.519        
cufflinks 10.04     High High
cufflinks 5.398        
cufflinks 0.858        
cufflinks 6.613        
cufflinks 10.911     High High
cufflinks 1.092        
cufflinks 5.307        
cufflinks 1.214        

0 Strain