Gene : Glyma.11G053300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR24067//PTHR24067:SF112 - UBIQUITIN-CONJUGATING ENZYME E2 Genomic Order:  533
Name:  ? Glyma.11G053300 Secondary Identifier:  ? PAC:30529347
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G053300 0.5kb upstream 0.5kb upstream 4060 true Chr11: 4003610-4007669 Glycine max
Glyma.11G053300 0.5kb upstream 0.5kb upstream 500 false Chr11: 4003610-4004109 Glycine max
Glyma.11G053300 0.5kb downstream 0.5kb downstream 4060 true Chr11: 4004110-4008169 Glycine max
Glyma.11G053300 0.5kb downstream 0.5kb downstream 500 false Chr11: 4007670-4008169 Glycine max
Glyma.11G053300 1.0kb upstream 1.0kb upstream 4560 true Chr11: 4003110-4007669 Glycine max
Glyma.11G053300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 4003110-4004109 Glycine max
Glyma.11G053300 1.0kb downstream 1.0kb downstream 4560 true Chr11: 4004110-4008669 Glycine max
Glyma.11G053300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 4007670-4008669 Glycine max
Glyma.11G053300 2.0kb upstream 2.0kb upstream 5560 true Chr11: 4002110-4007669 Glycine max
Glyma.11G053300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 4002110-4004109 Glycine max
Glyma.11G053300 2.0kb downstream 2.0kb downstream 5560 true Chr11: 4004110-4009669 Glycine max
Glyma.11G053300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 4007670-4009669 Glycine max
Glyma.11G053300 5.0kb upstream 5.0kb upstream 8560 true Chr11: 3999110-4007669 Glycine max
Glyma.11G053300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3999110-4004109 Glycine max
Glyma.11G053300 5.0kb downstream 5.0kb downstream 8560 true Chr11: 4004110-4012669 Glycine max
Glyma.11G053300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 4007670-4012669 Glycine max
Glyma.11G053300 10.0kb upstream 10.0kb upstream 13560 true Chr11: 3994110-4007669 Glycine max
Glyma.11G053300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3994110-4004109 Glycine max
Glyma.11G053300 10.0kb downstream 10.0kb downstream 13560 true Chr11: 4004110-4017669 Glycine max
Glyma.11G053300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 4007670-4017669 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309460 5265 Fabidae View MSA
124074734 5270 Rosid View MSA
123752891 5271 Pentapetalae View MSA
122794655 5272 Eudicot View MSA
122047112 5273 Angiosperm View MSA
121344973 5274 Embryophyte View MSA
123425853 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 80.3862 0.0 420.65 High  
cufflinks 38.0516 0.0 188.469 High Low
cufflinks 125.551 0.0 792.403 High High
cufflinks 51.4019 0.0 249.072 High  
cufflinks 87.4232 0.0 486.17 High  
cufflinks 79.7598 0.0 438.111 High  
cufflinks 42.2096 0.0 202.854 High Low
cufflinks 58.0102 0.0 299.57 High  
cufflinks 75.3982 0.0 401.21 High  
cufflinks 5.018        
cufflinks 11.467     High High
cufflinks 6.22        
cufflinks 2.917       Low
cufflinks 2.188       Low
cufflinks 13.908     High High
cufflinks 5.725        
cufflinks 5.532        
cufflinks 5.128        
cufflinks 3.638       Low
cufflinks 6.865        
cufflinks 9.49     High High
cufflinks 6.057        
cufflinks 5.373        
cufflinks 8.902     High  
cufflinks 6.41        
cufflinks 6.64     High  

0 Strain