Gene : Glyma.11G040300 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11387:SF15 - CYTOCHROME C OXIDASE SUBUNIT 6B-1 Genomic Order:  403
Name:  ? Glyma.11G040300 Secondary Identifier:  ? PAC:30531484
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3781 Glycine max pathologic  
Gmax PWY-7279 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G040300 0.5kb upstream 0.5kb upstream 2474 true Chr11: 2964358-2966831 Glycine max
Glyma.11G040300 0.5kb upstream 0.5kb upstream 500 false Chr11: 2966332-2966831 Glycine max
Glyma.11G040300 0.5kb downstream 0.5kb downstream 2474 true Chr11: 2963858-2966331 Glycine max
Glyma.11G040300 0.5kb downstream 0.5kb downstream 500 false Chr11: 2963858-2964357 Glycine max
Glyma.11G040300 1.0kb upstream 1.0kb upstream 2974 true Chr11: 2964358-2967331 Glycine max
Glyma.11G040300 1.0kb upstream 1.0kb upstream 1000 false Chr11: 2966332-2967331 Glycine max
Glyma.11G040300 1.0kb downstream 1.0kb downstream 2974 true Chr11: 2963358-2966331 Glycine max
Glyma.11G040300 1.0kb downstream 1.0kb downstream 1000 false Chr11: 2963358-2964357 Glycine max
Glyma.11G040300 2.0kb upstream 2.0kb upstream 3974 true Chr11: 2964358-2968331 Glycine max
Glyma.11G040300 2.0kb upstream 2.0kb upstream 2000 false Chr11: 2966332-2968331 Glycine max
Glyma.11G040300 2.0kb downstream 2.0kb downstream 3974 true Chr11: 2962358-2966331 Glycine max
Glyma.11G040300 2.0kb downstream 2.0kb downstream 2000 false Chr11: 2962358-2964357 Glycine max
Glyma.11G040300 5.0kb upstream 5.0kb upstream 6974 true Chr11: 2964358-2971331 Glycine max
Glyma.11G040300 5.0kb upstream 5.0kb upstream 5000 false Chr11: 2966332-2971331 Glycine max
Glyma.11G040300 5.0kb downstream 5.0kb downstream 6974 true Chr11: 2959358-2966331 Glycine max
Glyma.11G040300 5.0kb downstream 5.0kb downstream 5000 false Chr11: 2959358-2964357 Glycine max
Glyma.11G040300 10.0kb upstream 10.0kb upstream 11974 true Chr11: 2964358-2976331 Glycine max
Glyma.11G040300 10.0kb upstream 10.0kb upstream 10000 false Chr11: 2966332-2976331 Glycine max
Glyma.11G040300 10.0kb downstream 10.0kb downstream 11974 true Chr11: 2954358-2966331 Glycine max
Glyma.11G040300 10.0kb downstream 10.0kb downstream 10000 false Chr11: 2954358-2964357 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304521 5265 Fabidae View MSA
124072730 5270 Rosid View MSA
123743678 5271 Pentapetalae View MSA
122770737 5272 Eudicot View MSA
122050829 5273 Angiosperm View MSA
121351047 5274 Embryophyte View MSA
123424784 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0338042 0.0 0.15288 Low Low
cufflinks 0.232591 0.0 0.926808 Low  
cufflinks 0.621084 0.0 2.38067    
cufflinks 0.0904871 0.0 0.376918 Low  
cufflinks 0.197573 0.0 0.791266 Low  
cufflinks 0.254921 0.0 1.01242 Low  
cufflinks 18.0046 0.0 50.4979   High
cufflinks 0.201268 0.0 0.805991 Low  
cufflinks 0.0341298 0.0 0.154369 Low Low
cufflinks 0.043     Low  
cufflinks 0.067        
cufflinks 0.048     Low  
cufflinks 0.009     Low Low
cufflinks 0.034     Low  
cufflinks 0.018     Low Low
cufflinks 0.074     Low  
cufflinks 0.04     Low  
cufflinks 0.169       High
cufflinks 0.051     Low  
cufflinks 0.208       High
cufflinks 0.06     Low  
cufflinks 0.133       High
cufflinks 0.052     Low  
cufflinks 0.049     Low  
cufflinks 0.15       High
cufflinks 0.023     Low Low

0 Strain