Gene : Glyma.11G046800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR31311:SF3 - GLYCOSYLTRANSFERASE 6-RELATED Genomic Order:  468
Name:  ? Glyma.11G046800 Secondary Identifier:  ? PAC:30531213
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5936 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G046800 0.5kb upstream 0.5kb upstream 2038 true Chr11: 3497164-3499201 Glycine max
Glyma.11G046800 0.5kb upstream 0.5kb upstream 500 false Chr11: 3498702-3499201 Glycine max
Glyma.11G046800 0.5kb downstream 0.5kb downstream 2038 true Chr11: 3496664-3498701 Glycine max
Glyma.11G046800 0.5kb downstream 0.5kb downstream 500 false Chr11: 3496664-3497163 Glycine max
Glyma.11G046800 1.0kb upstream 1.0kb upstream 2538 true Chr11: 3497164-3499701 Glycine max
Glyma.11G046800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 3498702-3499701 Glycine max
Glyma.11G046800 1.0kb downstream 1.0kb downstream 2538 true Chr11: 3496164-3498701 Glycine max
Glyma.11G046800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 3496164-3497163 Glycine max
Glyma.11G046800 2.0kb upstream 2.0kb upstream 3538 true Chr11: 3497164-3500701 Glycine max
Glyma.11G046800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 3498702-3500701 Glycine max
Glyma.11G046800 2.0kb downstream 2.0kb downstream 3538 true Chr11: 3495164-3498701 Glycine max
Glyma.11G046800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 3495164-3497163 Glycine max
Glyma.11G046800 5.0kb upstream 5.0kb upstream 6538 true Chr11: 3497164-3503701 Glycine max
Glyma.11G046800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 3498702-3503701 Glycine max
Glyma.11G046800 5.0kb downstream 5.0kb downstream 6538 true Chr11: 3492164-3498701 Glycine max
Glyma.11G046800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 3492164-3497163 Glycine max
Glyma.11G046800 10.0kb upstream 10.0kb upstream 11538 true Chr11: 3497164-3508701 Glycine max
Glyma.11G046800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 3498702-3508701 Glycine max
Glyma.11G046800 10.0kb downstream 10.0kb downstream 11538 true Chr11: 3487164-3498701 Glycine max
Glyma.11G046800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 3487164-3497163 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041044 5273 Angiosperm View MSA
122302131 5265 Fabidae View MSA
124070170 5270 Rosid View MSA
123745893 5271 Pentapetalae View MSA
122788546 5272 Eudicot View MSA
121352143 5274 Embryophyte View MSA
123428220 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.90722 0.0 9.12547   Low
cufflinks 11.9589 0.0 32.3131    
cufflinks 3.87789 0.0 11.8161    
cufflinks 31.0061 0.0 83.6943 High High
cufflinks 6.88522 0.0 19.2567    
cufflinks 5.20668 0.0 15.0763    
cufflinks 27.399 0.0 73.6704 High High
cufflinks 18.7444 0.0 50.0107    
cufflinks 2.74954 0.0 8.72262   Low
cufflinks 16.693     High  
cufflinks 0.262       Low
cufflinks 13.253     High  
cufflinks 2.105        
cufflinks 0.458       Low
cufflinks 0.137       Low
cufflinks 23.622     High  
cufflinks 3.814        
cufflinks 43.527     High High
cufflinks 16.961     High  
cufflinks 25.204     High  
cufflinks 0.294       Low
cufflinks 26.142     High  
cufflinks 47.06     High High
cufflinks 0.208       Low
cufflinks 21.726     High  
cufflinks 0.677        

0 Strain