Gene : Glyma.11G038500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10150 - DNA REPAIR ENDONUCLEASE XPF Genomic Order:  385
Name:  ? Glyma.11G038500 Secondary Identifier:  ? PAC:30528605
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G038500 0.5kb upstream 0.5kb upstream 8709 true Chr11: 2750496-2759204 Glycine max
Glyma.11G038500 0.5kb upstream 0.5kb upstream 500 false Chr11: 2758705-2759204 Glycine max
Glyma.11G038500 0.5kb downstream 0.5kb downstream 8709 true Chr11: 2749996-2758704 Glycine max
Glyma.11G038500 0.5kb downstream 0.5kb downstream 500 false Chr11: 2749996-2750495 Glycine max
Glyma.11G038500 1.0kb upstream 1.0kb upstream 9209 true Chr11: 2750496-2759704 Glycine max
Glyma.11G038500 1.0kb upstream 1.0kb upstream 1000 false Chr11: 2758705-2759704 Glycine max
Glyma.11G038500 1.0kb downstream 1.0kb downstream 9209 true Chr11: 2749496-2758704 Glycine max
Glyma.11G038500 1.0kb downstream 1.0kb downstream 1000 false Chr11: 2749496-2750495 Glycine max
Glyma.11G038500 2.0kb upstream 2.0kb upstream 10209 true Chr11: 2750496-2760704 Glycine max
Glyma.11G038500 2.0kb upstream 2.0kb upstream 2000 false Chr11: 2758705-2760704 Glycine max
Glyma.11G038500 2.0kb downstream 2.0kb downstream 10209 true Chr11: 2748496-2758704 Glycine max
Glyma.11G038500 2.0kb downstream 2.0kb downstream 2000 false Chr11: 2748496-2750495 Glycine max
Glyma.11G038500 5.0kb upstream 5.0kb upstream 13209 true Chr11: 2750496-2763704 Glycine max
Glyma.11G038500 5.0kb upstream 5.0kb upstream 5000 false Chr11: 2758705-2763704 Glycine max
Glyma.11G038500 5.0kb downstream 5.0kb downstream 13209 true Chr11: 2745496-2758704 Glycine max
Glyma.11G038500 5.0kb downstream 5.0kb downstream 5000 false Chr11: 2745496-2750495 Glycine max
Glyma.11G038500 10.0kb upstream 10.0kb upstream 18209 true Chr11: 2750496-2768704 Glycine max
Glyma.11G038500 10.0kb upstream 10.0kb upstream 10000 false Chr11: 2758705-2768704 Glycine max
Glyma.11G038500 10.0kb downstream 10.0kb downstream 18209 true Chr11: 2740496-2758704 Glycine max
Glyma.11G038500 10.0kb downstream 10.0kb downstream 10000 false Chr11: 2740496-2750495 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026556 5273 Angiosperm View MSA
122312538 5265 Fabidae View MSA
124065772 5270 Rosid View MSA
123749861 5271 Pentapetalae View MSA
122792541 5272 Eudicot View MSA
121346199 5274 Embryophyte View MSA
123424869 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.15056 0.0 12.054   High
cufflinks 1.89094 0.0 7.18955    
cufflinks 2.33618 0.0 11.4142    
cufflinks 1.7676 0.0 6.81871    
cufflinks 1.35812 0.0 5.70936   Low
cufflinks 1.81725 0.0 6.96126    
cufflinks 1.51854 0.0 6.20845    
cufflinks 1.63963 0.0 6.4954    
cufflinks 1.62645 0.0 8.6408    
cufflinks 0.755       High
cufflinks 0.293        
cufflinks 0.43        
cufflinks 0.196       Low
cufflinks 0.155       Low
cufflinks 0.404        
cufflinks 0.281        
cufflinks 1.257       High
cufflinks 0.4        
cufflinks 0.419        
cufflinks 0.301        
cufflinks 0.363        
cufflinks 0.282        
cufflinks 0.664        
cufflinks 0.339        
cufflinks 0.286        
cufflinks 0.902       High

0 Strain