Gene : Glyma.11G033800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23249:SF16 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1 Genomic Order:  338
Name:  ? Glyma.11G033800 Secondary Identifier:  ? PAC:30528565
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G033800 0.5kb upstream 0.5kb upstream 5401 true Chr11: 2469205-2474605 Glycine max
Glyma.11G033800 0.5kb upstream 0.5kb upstream 500 false Chr11: 2469205-2469704 Glycine max
Glyma.11G033800 0.5kb downstream 0.5kb downstream 5401 true Chr11: 2469705-2475105 Glycine max
Glyma.11G033800 0.5kb downstream 0.5kb downstream 500 false Chr11: 2474606-2475105 Glycine max
Glyma.11G033800 1.0kb upstream 1.0kb upstream 5901 true Chr11: 2468705-2474605 Glycine max
Glyma.11G033800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 2468705-2469704 Glycine max
Glyma.11G033800 1.0kb downstream 1.0kb downstream 5901 true Chr11: 2469705-2475605 Glycine max
Glyma.11G033800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 2474606-2475605 Glycine max
Glyma.11G033800 2.0kb upstream 2.0kb upstream 6901 true Chr11: 2467705-2474605 Glycine max
Glyma.11G033800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 2467705-2469704 Glycine max
Glyma.11G033800 2.0kb downstream 2.0kb downstream 6901 true Chr11: 2469705-2476605 Glycine max
Glyma.11G033800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 2474606-2476605 Glycine max
Glyma.11G033800 5.0kb upstream 5.0kb upstream 9901 true Chr11: 2464705-2474605 Glycine max
Glyma.11G033800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 2464705-2469704 Glycine max
Glyma.11G033800 5.0kb downstream 5.0kb downstream 9901 true Chr11: 2469705-2479605 Glycine max
Glyma.11G033800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 2474606-2479605 Glycine max
Glyma.11G033800 10.0kb upstream 10.0kb upstream 14901 true Chr11: 2459705-2474605 Glycine max
Glyma.11G033800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 2459705-2469704 Glycine max
Glyma.11G033800 10.0kb downstream 10.0kb downstream 14901 true Chr11: 2469705-2484605 Glycine max
Glyma.11G033800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 2474606-2484605 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026490 5273 Angiosperm View MSA
122305248 5265 Fabidae View MSA
124068318 5270 Rosid View MSA
123752439 5271 Pentapetalae View MSA
122794769 5272 Eudicot View MSA
121344291 5274 Embryophyte View MSA
123427363 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.1393 0.0 44.3128   Low
cufflinks 20.6017 0.0 55.6597 High  
cufflinks 15.8653 0.0 43.5148   Low
cufflinks 22.1861 0.0 59.7613 High  
cufflinks 24.0694 0.0 64.6197 High  
cufflinks 19.4075 0.0 52.5776    
cufflinks 17.9388 0.0 48.9027    
cufflinks 29.2346 0.0 78.0712 High High
cufflinks 19.4928 0.0 52.775    
cufflinks 6.25       High
cufflinks 0.979       Low
cufflinks 3.723        
cufflinks 6.431       High
cufflinks 7.224     High High
cufflinks 1.337       Low
cufflinks 4.106        
cufflinks 2.815        
cufflinks 5.174        
cufflinks 5.436        
cufflinks 3.649        
cufflinks 1.797       Low
cufflinks 3.834        
cufflinks 4.852        
cufflinks 1.596       Low
cufflinks 3.758        
cufflinks 2.531        

0 Strain