Gene : Glyma.11G080600 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11670:SF40 - ACONITATE HYDRATASE 1 Genomic Order:  806
Name:  ? Glyma.11G080600 Secondary Identifier:  ? PAC:30528935
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYOXYLATE-BYPASS Glycine max pathologic  
Gmax PWY-5464 Glycine max pathologic  
Gmax PWY-561 Glycine max pathologic  
Gmax PWY-5690 Glycine max pathologic  
Gmax PWY-6549 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G080600 0.5kb upstream 0.5kb upstream 8862 true Chr11: 6057957-6066818 Glycine max
Glyma.11G080600 0.5kb upstream 0.5kb upstream 500 false Chr11: 6057957-6058456 Glycine max
Glyma.11G080600 0.5kb downstream 0.5kb downstream 8862 true Chr11: 6058457-6067318 Glycine max
Glyma.11G080600 0.5kb downstream 0.5kb downstream 500 false Chr11: 6066819-6067318 Glycine max
Glyma.11G080600 1.0kb upstream 1.0kb upstream 9362 true Chr11: 6057457-6066818 Glycine max
Glyma.11G080600 1.0kb upstream 1.0kb upstream 1000 false Chr11: 6057457-6058456 Glycine max
Glyma.11G080600 1.0kb downstream 1.0kb downstream 9362 true Chr11: 6058457-6067818 Glycine max
Glyma.11G080600 1.0kb downstream 1.0kb downstream 1000 false Chr11: 6066819-6067818 Glycine max
Glyma.11G080600 2.0kb upstream 2.0kb upstream 10362 true Chr11: 6056457-6066818 Glycine max
Glyma.11G080600 2.0kb upstream 2.0kb upstream 2000 false Chr11: 6056457-6058456 Glycine max
Glyma.11G080600 2.0kb downstream 2.0kb downstream 10362 true Chr11: 6058457-6068818 Glycine max
Glyma.11G080600 2.0kb downstream 2.0kb downstream 2000 false Chr11: 6066819-6068818 Glycine max
Glyma.11G080600 5.0kb upstream 5.0kb upstream 13362 true Chr11: 6053457-6066818 Glycine max
Glyma.11G080600 5.0kb upstream 5.0kb upstream 5000 false Chr11: 6053457-6058456 Glycine max
Glyma.11G080600 5.0kb downstream 5.0kb downstream 13362 true Chr11: 6058457-6071818 Glycine max
Glyma.11G080600 5.0kb downstream 5.0kb downstream 5000 false Chr11: 6066819-6071818 Glycine max
Glyma.11G080600 10.0kb upstream 10.0kb upstream 18362 true Chr11: 6048457-6066818 Glycine max
Glyma.11G080600 10.0kb upstream 10.0kb upstream 10000 false Chr11: 6048457-6058456 Glycine max
Glyma.11G080600 10.0kb downstream 10.0kb downstream 18362 true Chr11: 6058457-6076818 Glycine max
Glyma.11G080600 10.0kb downstream 10.0kb downstream 10000 false Chr11: 6066819-6076818 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300043 5265 Fabidae View MSA
124069604 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 113.603 0.0 814.463 High High
cufflinks 22.8643 0.0 76.7628 High Low
cufflinks 81.2922 0.0 482.766 High High
cufflinks 34.2058 0.0 158.268 High  
cufflinks 63.7119 0.0 324.429 High  
cufflinks 46.1885 0.0 207.004 High  
cufflinks 33.1015 0.0 148.521 High  
cufflinks 28.3443 0.0 100.579 High  
cufflinks 41.1829 0.0 173.889 High  
cufflinks 6.536       Low
cufflinks 11.266     High  
cufflinks 14.589     High  
cufflinks 21.652     High High
cufflinks 23.791     High High
cufflinks 5.898     High Low
cufflinks 7.179     High  
cufflinks 8.167     High  
cufflinks 14.641     High  
cufflinks 7.341        
cufflinks 19.318     High High
cufflinks 10.597     High  
cufflinks 14.516     High  
cufflinks 4.71       Low
cufflinks 13.269     High  
cufflinks 12.681     High  
cufflinks 8.681     High  

0 Strain